RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SLC29A3Q9BZD2 475 aa22.28■■□□□ 1.16
VPS53-211ENST00000571805 TNKS2Q9H2K2 1166 aa22.28■■□□□ 1.16
VPS53-211ENST00000571805 TOR3AQ9H497 397 aa22.28■■□□□ 1.16
VPS53-211ENST00000571805 GALNT8Q9NY28 637 aa22.28■■□□□ 1.16
VPS53-211ENST00000571805 OLFM2O95897 454 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 CST1P01037 141 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 SOD2P04179 222 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 MAPK8P45983 427 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 GRSF1Q12849 480 aaKnown RBP eCLIP22.27■■□□□ 1.164e-9■■■■■ 30.8
VPS53-211ENST00000571805 ARHGEF7Q14155 803 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 NEDD8Q15843 81 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 DGKKQ5KSL6 1271 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 FAM117BQ6P1L5 589 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 DNAJC14Q6Y2X3 702 aaPredicted RBP22.27■■□□□ 1.16
VPS53-211ENST00000571805 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.27■■□□□ 1.16
VPS53-211ENST00000571805 PAF1Q8N7H5 531 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 ULK4Q96C45 1275 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 MTFMTQ96DP5 389 aaKnown RBP22.27■■□□□ 1.16
VPS53-211ENST00000571805 OSBPL10Q9BXB5 764 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 PAIP1Q9H074 479 aaKnown RBP22.27■■□□□ 1.16
VPS53-211ENST00000571805 ATP13A3Q9H7F0 1226 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 KAT8Q9H7Z6 458 aaKnown RBP22.27■■□□□ 1.16
VPS53-211ENST00000571805 SMURF2Q9HAU4 748 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 OBSL1O75147 1896 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 JUNBP17275 347 aaPredicted RBP22.27■■□□□ 1.16
VPS53-211ENST00000571805 TTLL9Q3SXZ7 439 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 FAM43BQ6ZT52 329 aaPredicted RBP22.27■■□□□ 1.16
VPS53-211ENST00000571805 TERB1Q8NA31 727 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 OR13F1Q8NGS4 319 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 CLHC1Q8NHS4 586 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 ACPTQ9BZG2 426 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 ACTR8Q9H981 624 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 IL21Q9HBE4 155 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 FAM118AQ9NWS6 357 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 INVSQ9Y283 1065 aa22.27■■□□□ 1.16
VPS53-211ENST00000571805 NPIPB15A6NHN6 443 aaPredicted RBP22.26■■□□□ 1.15
VPS53-211ENST00000571805 PRRG1O14668 218 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 PRKD3O94806 890 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 CLDN9O95484 217 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 NRIP1P48552 1158 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 ENTPD1P49961 510 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 PPP2R2BQ00005 443 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 SEMG2Q02383 582 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 CRTC1Q6UUV9 634 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 FKBP9P1Q75LS8 142 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 THAP5Q7Z6K1 395 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 MICU2Q8IYU8 434 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 PHACTR4Q8IZ21 702 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 PJA1Q8NG27 643 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 MBOAT4Q96T53 435 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 KCTD5Q9NXV2 234 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 PCDHB14Q9Y5E9 798 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 PLXNB3Q9ULL4 1909 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 ARHGEF15O94989 841 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 CBSLP0DN79 551 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 CBSP35520 551 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 GZMMP51124 257 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 LAPTM5Q13571 262 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 ZXDCQ2QGD7 858 aaPredicted RBP22.26■■□□□ 1.15
VPS53-211ENST00000571805 ATG9BQ674R7 924 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 ELMSAN1Q6PJG2 1045 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 GPR149Q86SP6 731 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 CALHM3Q86XJ0 350 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 HS3ST5Q8IZT8 346 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 FAM162AQ96A26 154 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 LYSMD1Q96S90 227 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 PLGRKTQ9HBL7 147 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 SERHLQ9NQF3 203 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 DCAF13Q9NV06 445 aaKnown RBP22.26■■□□□ 1.15
VPS53-211ENST00000571805 USE1Q9NZ43 259 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 DLGAP4Q9Y2H0 992 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 AP3M1Q9Y2T2 418 aa22.26■■□□□ 1.15
VPS53-211ENST00000571805 A0A1W2PPW3 197 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 AOC2O75106 756 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 PDYNP01213 254 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 ANXA5P08758 320 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 NSG1P42857 185 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 LMAN2Q12907 356 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 PON2Q15165 354 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 CPSF6Q16630 551 aaKnown RBP eCLIP22.25■■□□□ 1.15
VPS53-211ENST00000571805 KLHL35Q6PF15 583 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 C10orf111Q8N326 155 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 AMBRA1Q9C0C7 1298 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 ING2Q9H160 280 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 SLC32A1Q9H598 525 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 LTB4R2Q9NPC1 389 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 ABCB8Q9NUT2 735 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 CXCL10P02778 98 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 RETP07949 1114 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 CRHBPP24387 322 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 RPIAP49247 311 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 PTPN5P54829 565 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 B4GALNT1Q00973 533 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 RAB33AQ14088 237 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 FGD3Q5JSP0 725 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 LRIF1Q5T3J3 769 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 TTC23Q5W5X9 447 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 ANKRD34AQ69YU3 496 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 GCNT7Q6ZNI0 430 aa22.25■■□□□ 1.15
VPS53-211ENST00000571805 SVOPLQ8N434 492 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms