RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RSC1A1Q92681 617 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 NXNL1Q96CM4 212 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 FAM122AQ96E09 287 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 ATOH8Q96SQ7 321 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 TBC1D10AQ9BXI6 508 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 SLC12A9Q9BXP2 914 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 ROPN1BQ9BZX4 212 aaPredicted RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 DERL2Q9GZP9 239 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 MVB12BQ9H7P6 319 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 PPCSQ9HAB8 311 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 ROPN1Q9HAT0 212 aaPredicted RBP9.03□□□□□ -0.96
VPS35-211ENST00000569950 GPAMQ9HCL2 828 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 POT1Q9NUX5 634 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 TXNDC16Q9P2K2 825 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 LRIT1Q9P2V4 623 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 FTSJ1Q9UET6 329 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 TBK1Q9UHD2 729 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 EMCNQ9ULC0 261 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 PLAGL1Q9UM63 463 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 PDE10AQ9Y233 779 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 CHD8Q9HCK8 2581 aa9.03□□□□□ -0.96
VPS35-211ENST00000569950 ASPMQ8IZT6 3477 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 FER1L5A0AVI2 2057 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 SPAARA0A1B0GVQ0 90 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 NPEPPSL1A6NEC2 478 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 SMIM23A6NLE4 172 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 F8W8V4 182 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 BTN3A3O00478 584 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 RASGRF2O14827 1237 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 TNFSF14O43557 240 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 ERLIN1O75477 346 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 KRT38O76015 456 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 CCDC166P0CW27 439 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 ALPPL2P10696 532 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 PNLIPP16233 465 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 CRABP2P29373 138 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 PKLRP30613 574 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 CLDN6P56747 220 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 IL2P60568 153 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 PRKG2Q13237 762 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 TSNQ15631 228 aaKnown RBP9.02□□□□□ -0.97
VPS35-211ENST00000569950 TRIP6Q15654 476 aaKnown RBP9.02□□□□□ -0.97
VPS35-211ENST00000569950 TTLL9Q3SXZ7 439 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 TECRLQ5HYJ1 363 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 UGT3A1Q6NUS8 523 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 LRIG3Q6UXM1 1119 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 DCUN1D3Q8IWE4 304 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 ADGRF3Q8IZF5 1079 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 CFAP61Q8NHU2 1237 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 HMGCLL1Q8TB92 370 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 IFI44Q8TCB0 444 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 ZFPM2Q8WW38 1151 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 TSPAN17Q96FV3 270 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 IL17FQ96PD4 163 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 PKP4Q99569 1192 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 CCDC3Q9BQI4 270 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 HGH1Q9BTY7 390 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 C12orf65Q9H3J6 166 aaKnown RBP9.02□□□□□ -0.97
VPS35-211ENST00000569950 TFB2MQ9H5Q4 396 aaKnown RBP9.02□□□□□ -0.97
VPS35-211ENST00000569950 XKR8Q9H6D3 395 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 EVA1BQ9NVM1 165 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 SPHK1Q9NYA1 384 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 TMEM9Q9P0T7 183 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 DOLKQ9UPQ8 538 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 ASF1AQ9Y294 204 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 ASB1Q9Y576 335 aa9.02□□□□□ -0.97
VPS35-211ENST00000569950 A0A087X1B8 175 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 A0A1W2PNU3 283 aaPredicted RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 CPED1A4D0V7 1026 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 GOLGA8RI6L899 631 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 SLC16A5O15375 505 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 TAPBPO15533 448 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 KLK8O60259 260 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 KRT37O76014 449 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 KLHL2O95198 593 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 KCNK5O95279 499 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 SLC16A8O95907 504 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 VIPP01282 170 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 GP1BAP07359 652 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 LTA4HP09960 611 aaKnown RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 PYGBP11216 843 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 HOXB3P14651 431 aaPredicted RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 SLC2A4P14672 509 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 IMPA1P29218 277 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 TYK2P29597 1187 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 HALP42357 657 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 GPR3P46089 330 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 LSSP48449 732 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 EPHA4P54764 986 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 YBX1P67809 324 aaKnown RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 CCL7P80098 99 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 SP140Q13342 867 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 MPP2Q14168 576 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 FASTKQ14296 549 aaKnown RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 CSHL1Q14406 222 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 CYP2A13Q16696 494 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 C18orf21Q32NC0 220 aaPredicted RBP9.01□□□□□ -0.97
VPS35-211ENST00000569950 INAVAQ3KP66 663 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 CDCP2Q5VXM1 449 aa9.01□□□□□ -0.97
VPS35-211ENST00000569950 NKAIN2Q5VXU1 208 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms