RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 KLK13Q9UKR3 277 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 TP53TG3Q9ULZ0 132 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 RIPK3Q9Y572 518 aa2.48□□□□□ -2.01
VPS35-207ENST00000568191 HYKKA2RU49 373 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 TO15178 435 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 MAGEC1O60732 1142 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 PRAMEF11O60813 436 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 DUS4LO95620 317 aaKnown RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 SLC9A3P48764 834 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 PGFP49763 221 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 PAX9P55771 341 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 SIRPAP78324 504 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 AIMP2Q13155 320 aaKnown RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 GRAPQ13588 217 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 FASTKD3Q14CZ7 662 aaKnown RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 PDLIM3Q53GG5 364 aaPredicted RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 KIAA0930Q6ICG6 404 aaPredicted RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 ZNF774Q6NX45 483 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 TBC1D1Q86TI0 1168 aaPredicted RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 LACC1Q8IV20 430 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 LMNTD2Q8IXW0 634 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 ADGRF2Q8IZF7 708 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 CDK20Q8IZL9 346 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 WDTC1Q8N5D0 677 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 GPRC5AQ8NFJ5 357 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 GTF3AQ92664 365 aaKnown RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 SLCO2A1Q92959 643 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 CENPTQ96BT3 561 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 SAT2Q96F10 170 aaPredicted RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 URM1Q9BTM9 101 aaKnown RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 LMF2Q9BU23 707 aaKnown RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 NUP85Q9BW27 656 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 VN1R1Q9GZP7 353 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 HRH4Q9H3N8 390 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 EIF2B3Q9NR50 452 aaKnown RBP2.47□□□□□ -2.01
VPS35-207ENST00000568191 PAG1Q9NWQ8 432 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 NUDT4Q9NZJ9 180 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 CACNG4Q9UBN1 327 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 EPHA6Q9UF33 1036 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 NME7Q9Y5B8 376 aa2.47□□□□□ -2.01
VPS35-207ENST00000568191 CDRT15L2A8MXV6 281 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 USO1O60763 962 aaKnown RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 MITFO75030 526 aaPredicted RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 PRLRP16471 622 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 PIK3R1P27986 724 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 MMP12P39900 470 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 HADHAP40939 763 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 MATR3P43243 847 aaKnown RBP eCLIP2.46□□□□□ -2.02
VPS35-207ENST00000568191 TSFMP43897 325 aaKnown RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 RPL21P46778 160 aaKnown RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 ARF3P61204 181 aaPredicted RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 ARF1P84077 181 aaKnown RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 ENPP2Q13822 863 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 GLIPR1L2Q4G1C9 344 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 GRTP1Q5TC63 336 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 LCN1P1Q5VSP4 162 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 CCDC30Q5VVM6 783 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 PTAR1Q7Z6K3 402 aaPredicted RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 KIRREL3Q8IZU9 778 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 MAPKAPK5-AS1Q8N8E1 139 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 OR13C3Q8NGS6 347 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 OR6S1Q8NH40 331 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 MAPK15Q8TD08 544 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 PHLDA1Q8WV24 401 aaPredicted RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 USP6NLQ92738 828 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 OMA1Q96E52 524 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 MPP4Q96JB8 637 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 CEP295NLQ96MC4 621 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 FOXN4Q96NZ1 517 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 NEK1Q96PY6 1258 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 BTBD10Q9BSF8 475 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 FNDC11Q9BVV2 318 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 CHMP4AQ9BY43 222 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 TRIM6Q9C030 488 aaPredicted RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 FTOQ9C0B1 505 aaKnown RBP eCLIP2.46□□□□□ -2.02
VPS35-207ENST00000568191 CPVLQ9H3G5 476 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 A4GALTQ9NPC4 353 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 TEX10Q9NXF1 929 aaPredicted RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 C19orf25Q9UFG5 118 aaPredicted RBP2.46□□□□□ -2.02
VPS35-207ENST00000568191 MUTYHQ9UIF7 546 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 HACL1Q9UJ83 578 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 MYH15Q9Y2K3 1946 aa2.46□□□□□ -2.02
VPS35-207ENST00000568191 ASTN2O75129 1339 aaPredicted RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 PGPEP1LA6NFU8 196 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 MSGN1A6NI15 193 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 C15orf61A6NNL5 157 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 IPO8O15397 1037 aaKnown RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 EPB41L2O43491 1005 aaKnown RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 AVILO75366 819 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 SRSF10O75494 262 aaKnown RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 GJB3O75712 270 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 OR2C1O95371 312 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 GPIP06744 558 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 PRKAR1AP10644 381 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 GABRB1P18505 474 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 GATA2P23769 480 aaPredicted RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 GARSP41250 739 aaKnown RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 MFAP4P55083 255 aa2.45□□□□□ -2.02
VPS35-207ENST00000568191 MAZP56270 477 aaKnown RBP2.45□□□□□ -2.02
VPS35-207ENST00000568191 TMEM50BP56557 158 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms