RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TNRC6AQ8NDV7 1962 aaKnown RBP16.55■□□□□ 0.24
CLN3-216ENST00000565316 TCRBV7S2A1N4TA0A589 114 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 CCDC162PA2VCL2 907 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 KLF7O75840 302 aaPredicted RBP16.54■□□□□ 0.24
CLN3-216ENST00000565316 FTH1P02794 183 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 CHRM5P08912 532 aaPredicted RBP16.54■□□□□ 0.24
CLN3-216ENST00000565316 UGT2B7P16662 529 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 AGXTP21549 392 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 SYCE1Q8N0S2 351 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 EFCAB3Q8N7B9 438 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 C19orf47Q8N9M1 422 aaKnown RBP16.54■□□□□ 0.24
CLN3-216ENST00000565316 FDCSPQ8NFU4 85 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 OR13J1Q8NGT2 312 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 OR5K2Q8NHB8 316 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 ELMO1Q92556 727 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 ALS2CR12Q96Q35 445 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 SPHK1Q9NYA1 384 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 RIMKLBQ9ULI2 386 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 PACSIN2Q9UNF0 486 aaPredicted RBP16.54■□□□□ 0.24
CLN3-216ENST00000565316 ASF1AQ9Y294 204 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 AP1M2Q9Y6Q5 423 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 PIKFYVEQ9Y2I7 2098 aa16.54■□□□□ 0.24
CLN3-216ENST00000565316 OR51F1A6NGY5 319 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 ERI2A8K979 691 aaKnown RBP16.53■□□□□ 0.24
CLN3-216ENST00000565316 C9J4A7 227 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 HCRTR1O43613 425 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 DPM1O60762 260 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 VPS4BO75351 444 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 PTMAP06454 111 aaKnown RBP16.53■□□□□ 0.24
CLN3-216ENST00000565316 UQCRFS1P47985 274 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 RRADP55042 308 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 ATP1A4Q13733 1029 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 LYPLAL1Q5VWZ2 237 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 RHBDD2Q6NTF9 364 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 KIAA1328Q86T90 577 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 TRIM73Q86UV7 250 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 TMEM139Q8IV31 216 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 GPR135Q8IZ08 494 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 OR52K1Q8NGK4 314 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 HES6Q96HZ4 224 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 SMAD5Q99717 465 aaKnown RBP16.53■□□□□ 0.24
CLN3-216ENST00000565316 C17orf62Q9BQA9 187 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 NUDT9Q9BW91 350 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 SLC7A5P2Q9GIP4 190 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 VPS4AQ9UN37 437 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 PADI2Q9Y2J8 665 aa16.53■□□□□ 0.24
CLN3-216ENST00000565316 A0A0J9YY10 115 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 OR2B3O76000 313 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 SUN1O94901 812 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 FTCDO95954 541 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 OR56A5P0C7T3 313 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 CBSLP0DN79 551 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 GNLYP22749 145 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 STIP1P31948 543 aaKnown RBP16.52■□□□□ 0.24
CLN3-216ENST00000565316 CBSP35520 551 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 ACVR1Q04771 509 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 CDH17Q12864 832 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 SLC5A12Q1EHB4 618 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 CCDC38Q502W7 563 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 JMJD6Q6NYC1 403 aaPredicted RBP16.52■□□□□ 0.24
CLN3-216ENST00000565316 HOOK3Q86VS8 718 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 RAB43Q86YS6 212 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 DNAJC22Q8N4W6 341 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 Q8NA96 180 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 PCSK5Q92824 1860 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 IP6K3Q96PC2 410 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 GBP5Q96PP8 586 aa16.52■□□□□ 0.24
CLN3-216ENST00000565316 SPRTNQ9H040 489 aaPredicted RBP16.52■□□□□ 0.24
CLN3-216ENST00000565316 G3BP2Q9UN86 482 aaKnown RBP16.52■□□□□ 0.24
CLN3-216ENST00000565316 NOTCH2Q04721 2471 aa16.52■□□□□ 0.23
CLN3-216ENST00000565316 CCDC78A2IDD5 438 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 BLACEA4D250 179 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 ZNF185O15231 689 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 OR1I1O60431 355 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 KIF5AQ12840 1032 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 SSPNQ14714 243 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 KIR2DS3Q14952 304 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 BRD3Q15059 726 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 OASLQ15646 514 aaKnown RBP16.51■□□□□ 0.23
CLN3-216ENST00000565316 NAPRTQ6XQN6 538 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 MRGPREQ86SM8 312 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 TAB3Q8N5C8 712 aaPredicted RBP16.51■□□□□ 0.23
CLN3-216ENST00000565316 RBMXL3Q8N7X1 1067 aaKnown RBP16.51■□□□□ 0.23
CLN3-216ENST00000565316 PROKR1Q8TCW9 393 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 N4BP2L2Q92802 583 aaPredicted RBP16.51■□□□□ 0.23
CLN3-216ENST00000565316 HDAC10Q969S8 669 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 SGSM3Q96HU1 749 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 RANBP9Q96S59 729 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 BAG1Q99933 345 aaPredicted RBP16.51■□□□□ 0.23
CLN3-216ENST00000565316 RBSNQ9H1K0 784 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 GPR83Q9NYM4 423 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 SHANK1Q9Y566 2161 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 CENPEQ02224 2701 aa16.51■□□□□ 0.23
CLN3-216ENST00000565316 A0A0U1RQJ8 604 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 HEATR9A2RTY3 570 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 A6NL46 340 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 CTSBP07858 339 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 CD63P08962 238 aa16.5■□□□□ 0.23
CLN3-216ENST00000565316 PEBP1P30086 187 aaKnown RBP16.5■□□□□ 0.23
CLN3-216ENST00000565316 FDFT1P37268 417 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms