RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 NAP1L1P55209 391 aaKnown RBP16.29■□□□□ 0.2
CLN3-211ENST00000564091 CACNG1Q06432 222 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 POU6F1Q14863 301 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 PLEKHN1Q494U1 663 aaPredicted RBP16.29■□□□□ 0.2
CLN3-211ENST00000564091 KCTD11Q693B1 232 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 HPS6Q86YV9 775 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 TMEM151BQ8IW70 566 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 KLHDC8BQ8IXV7 354 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 SNRNP40Q96DI7 357 aaKnown RBP16.29■□□□□ 0.2
CLN3-211ENST00000564091 TCTN2Q96GX1 697 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 GBP5Q96PP8 586 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 OR2A14Q96R47 310 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 CUEDC1Q9NWM3 386 aaPredicted RBP16.29■□□□□ 0.2
CLN3-211ENST00000564091 DHCR7Q9UBM7 475 aaKnown RBP16.29■□□□□ 0.2
CLN3-211ENST00000564091 PLAGL1Q9UM63 463 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 ASF1AQ9Y294 204 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 TDRKHQ9Y2W6 561 aaKnown RBP16.29■□□□□ 0.2
CLN3-211ENST00000564091 PTRH2Q9Y3E5 179 aaKnown RBP16.29■□□□□ 0.2
CLN3-211ENST00000564091 TJP3O95049 919 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 CHRM5P08912 532 aaPredicted RBP16.28■□□□□ 0.2
CLN3-211ENST00000564091 ACADLP28330 430 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 GABRA4P48169 554 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 RWDD2BP57060 319 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 SSPNQ14714 243 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 SLC9A5Q14940 896 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 PARP6Q2NL67 630 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 VWA5B1Q5TIE3 1220 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 ARHGEF18Q6ZSZ5 1173 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 CCDC170Q8IYT3 715 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 TAB3Q8N5C8 712 aaPredicted RBP16.28■□□□□ 0.2
CLN3-211ENST00000564091 CISD2Q8N5K1 135 aaKnown RBP16.28■□□□□ 0.2
CLN3-211ENST00000564091 ZNF655Q8N720 491 aaPredicted RBP16.28■□□□□ 0.2
CLN3-211ENST00000564091 FAM71DQ8N9W8 422 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 ELMO1Q92556 727 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 ALG3Q92685 438 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.28■□□□□ 0.2
CLN3-211ENST00000564091 LRRC45Q96CN5 670 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 PPP1R2P1Q96PQ5 205 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 SLC29A3Q9BZD2 475 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 GPN3Q9UHW5 284 aaPredicted RBP16.28■□□□□ 0.2
CLN3-211ENST00000564091 CDYLQ9Y232 598 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 AP1M2Q9Y6Q5 423 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 SEC16AO15027 2179 aa16.28■□□□□ 0.2
CLN3-211ENST00000564091 TNRC6AQ8NDV7 1962 aaKnown RBP16.27■□□□□ 0.2
CLN3-211ENST00000564091 MYO9AB2RTY4 2548 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 OR51F1A6NGY5 319 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 CNOT3O75175 753 aaKnown RBP16.27■□□□□ 0.2
CLN3-211ENST00000564091 AP2A2O94973 939 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 PTMSP20962 102 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 SHMT2P34897 504 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 FOLR3P41439 243 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 DCDP81605 110 aaKnown RBP16.27■□□□□ 0.2
CLN3-211ENST00000564091 NR6A1Q15406 480 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 DCAF10Q5QP82 559 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 RHBDD2Q6NTF9 364 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 FAM20CQ8IXL6 584 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 GALNT16Q8N428 558 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 FLVCR1-AS1Q8TAF5 88 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 STYXQ8WUJ0 223 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 FER1L6-AS2Q96M78 137 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 C17orf62Q9BQA9 187 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 LUC7LQ9NQ29 371 aaKnown RBP16.27■□□□□ 0.2
CLN3-211ENST00000564091 ASF1BQ9NVP2 202 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 IRAK4Q9NWZ3 460 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 C5AR2Q9P296 337 aa16.27■□□□□ 0.2
CLN3-211ENST00000564091 IFT80Q9P2H3 777 aaPredicted RBP16.27■□□□□ 0.2
CLN3-211ENST00000564091 BHMG1C9JSJ3 638 aaPredicted RBP16.26■□□□□ 0.19
CLN3-211ENST00000564091 PEX12O00623 359 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 LIN7AO14910 233 aaPredicted RBP16.26■□□□□ 0.19
CLN3-211ENST00000564091 ZSCAN9O15535 394 aaPredicted RBP16.26■□□□□ 0.19
CLN3-211ENST00000564091 GSTM1P09488 218 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 VARSP26640 1264 aaKnown RBP16.26■□□□□ 0.19
CLN3-211ENST00000564091 COL8A1P27658 744 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 CYLC1P35663 651 aaPredicted RBP16.26■□□□□ 0.19
CLN3-211ENST00000564091 NSG1P42857 185 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 GSTM4Q03013 218 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 ESPL1Q14674 2120 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 TMTC1Q8IUR5 882 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 TBC1D21Q8IYX1 336 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 CLEC1AQ8NC01 280 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 IP6K3Q96PC2 410 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 ALS2CR12Q96Q35 445 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 TRIM5Q9C035 493 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 ZNF552Q9H707 407 aaPredicted RBP16.26■□□□□ 0.19
CLN3-211ENST00000564091 LRRC40Q9H9A6 602 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 P4HTMQ9NXG6 502 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 NDOR1Q9UHB4 597 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 ERRFI1Q9UJM3 462 aaPredicted RBP16.26■□□□□ 0.19
CLN3-211ENST00000564091 B3GNT3Q9Y2A9 372 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 KLHL20Q9Y2M5 609 aa16.26■□□□□ 0.19
CLN3-211ENST00000564091 EPN1Q9Y6I3 576 aaPredicted RBP16.26■□□□□ 0.19
CLN3-211ENST00000564091 PCSK5Q92824 1860 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 A0A0J9YY10 115 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 SLC5A10A0PJK1 596 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 SOWAHDA6NJG2 315 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 ISM1B1AKI9 464 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 DDAH2O95865 285 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 UMODP07911 640 aa16.25■□□□□ 0.19
CLN3-211ENST00000564091 MSNP26038 577 aaKnown RBP16.25■□□□□ 0.19
CLN3-211ENST00000564091 PEBP1P30086 187 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms