RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RAB44Q7Z6P3 723 aaPredicted RBP21.15■□□□□ 0.98
SNX1-210ENST00000560260 MYO1HQ8N1T3 1032 aa21.15■□□□□ 0.98
SNX1-210ENST00000560260 SPATA6LQ8N4H0 392 aa21.15■□□□□ 0.98
SNX1-210ENST00000560260 EPS8L3Q8TE67 593 aaKnown RBP21.15■□□□□ 0.98
SNX1-210ENST00000560260 PDLIM5Q96HC4 596 aaKnown RBP21.15■□□□□ 0.98
SNX1-210ENST00000560260 FOPNLQ96NB1 174 aa21.15■□□□□ 0.98
SNX1-210ENST00000560260 TFB2MQ9H5Q4 396 aaKnown RBP21.15■□□□□ 0.98
SNX1-210ENST00000560260 EURLQ9NYK6 297 aa21.15■□□□□ 0.98
SNX1-210ENST00000560260 IKBKGQ9Y6K9 419 aa21.15■□□□□ 0.98
SNX1-210ENST00000560260 TRIM49D1C9J1S8 452 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 DUX1O43812 170 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 TOP3BO95985 862 aaKnown RBP21.14■□□□□ 0.97
SNX1-210ENST00000560260 HOXB3P14651 431 aaPredicted RBP21.14■□□□□ 0.97
SNX1-210ENST00000560260 PKLRP30613 574 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 SERPINB8P50452 374 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 GFERP55789 205 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 IRF9Q00978 393 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 SQSTM1Q13501 440 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 LRRC8EQ6NSJ5 796 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 ZNF574Q6ZN55 896 aaPredicted RBP21.14■□□□□ 0.97
SNX1-210ENST00000560260 DGLUCYQ7Z3D6 616 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 B3GNT8Q7Z7M8 397 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 MARCH9Q86YJ5 346 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 NKAPQ8N5F7 415 aaKnown RBP21.14■□□□□ 0.97
SNX1-210ENST00000560260 MYRIPQ8NFW9 859 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 OR4E2Q8NGC2 313 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 OR10G6Q8NH81 332 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 DENND1AQ8TEH3 1009 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 MZB1Q8WU39 189 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 LCN9Q8WX39 176 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 GFM1Q96RP9 751 aaKnown RBP21.14■□□□□ 0.97
SNX1-210ENST00000560260 SYTL2Q9HCH5 934 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 PSMC3IPQ9P2W1 217 aaPredicted RBP21.14■□□□□ 0.97
SNX1-210ENST00000560260 POLG2Q9UHN1 485 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 PTPRBP23467 1997 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 UNC13CQ8NB66 2214 aa21.14■□□□□ 0.97
SNX1-210ENST00000560260 SPTBN2O15020 2390 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 NPEPPSL1A6NEC2 478 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 MYO1CO00159 1063 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 CDC7O00311 574 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 BTN3A3O00478 584 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 CATP04040 527 aaKnown RBP21.13■□□□□ 0.97
SNX1-210ENST00000560260 RPN2P04844 631 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 CCNFP41002 786 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 SLCO1A2P46721 670 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 SPIDRQ14159 915 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 PHKG1Q16816 387 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 MAP9Q49MG5 647 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 UBE2R2Q712K3 238 aaPredicted RBP21.13■□□□□ 0.97
SNX1-210ENST00000560260 TAOK1Q7L7X3 1001 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 SLITRK4Q8IW52 837 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 CHCHD4Q8N4Q1 142 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 LINC01555Q8NAE3 123 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 PKP4Q99569 1192 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 TWSG1Q9GZX9 223 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 ABCG4Q9H172 646 aa21.13■□□□□ 0.97
SNX1-210ENST00000560260 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.13■□□□□ 0.97
SNX1-210ENST00000560260 OR6C74A6NCV1 312 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 OR5K3A6NET4 321 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 BTN3A1O00481 513 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 KRT38O76015 456 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 CPNE6O95741 557 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 MT-CO3P00414 261 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 C2P06681 752 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 CCDC166P0CW27 439 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 CDK4P11802 303 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 MPSTP25325 297 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 CNTFP26441 200 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 CRABP2P29373 138 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 PEBP1P30086 187 aaKnown RBP21.12■□□□□ 0.97
SNX1-210ENST00000560260 SBSNQ6UWP8 590 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 RAPH1Q70E73 1250 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 AMIGO1Q86WK6 493 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 ADGRF3Q8IZF5 1079 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 CENPLQ8N0S6 344 aaPredicted RBP21.12■□□□□ 0.97
SNX1-210ENST00000560260 FBXO15Q8NCQ5 510 aaPredicted RBP21.12■□□□□ 0.97
SNX1-210ENST00000560260 WDR48Q8TAF3 677 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 NCSTNQ92542 709 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 RAD51AP1Q96B01 352 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 AHCYL2Q96HN2 611 aaKnown RBP21.12■□□□□ 0.97
SNX1-210ENST00000560260 UBXN10Q96LJ8 280 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 SLC12A9Q9BXP2 914 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 DERL2Q9GZP9 239 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 SRMSQ9H3Y6 488 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 EPB41L1Q9H4G0 881 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 IGSF5Q9NSI5 407 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 PDE10AQ9Y233 779 aa21.12■□□□□ 0.97
SNX1-210ENST00000560260 MN1Q10571 1320 aaPredicted RBP21.12■□□□□ 0.97
SNX1-210ENST00000560260 CCDC151A5D8V7 595 aa21.11■□□□□ 0.97
SNX1-210ENST00000560260 FAM221BA6H8Z2 402 aa21.11■□□□□ 0.97
SNX1-210ENST00000560260 SMIM23A6NLE4 172 aa21.11■□□□□ 0.97
SNX1-210ENST00000560260 RASGRF2O14827 1237 aa21.11■□□□□ 0.97
SNX1-210ENST00000560260 TCEA3O75764 348 aa21.11■□□□□ 0.97
SNX1-210ENST00000560260 C8GP07360 202 aa21.11■□□□□ 0.97
SNX1-210ENST00000560260 SNRPAP09012 282 aaKnown RBP21.11■□□□□ 0.97
SNX1-210ENST00000560260 CD1DP15813 335 aa21.11■□□□□ 0.97
SNX1-210ENST00000560260 AMD1P17707 334 aa21.11■□□□□ 0.97
SNX1-210ENST00000560260 POLR2CP19387 275 aaPredicted RBP21.11■□□□□ 0.97
SNX1-210ENST00000560260 PPM1FP49593 454 aaPredicted RBP21.11■□□□□ 0.97
SNX1-210ENST00000560260 SP140Q13342 867 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms