RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 FTH1P02794 183 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 CBSLP0DN79 551 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 PIM1P11309 404 aaPredicted RBP8.86□□□□□ -0.99
HDDC3-204ENST00000559834 PTMSP20962 102 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 ACRV1P26436 265 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 PSMB4P28070 264 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 CBSP35520 551 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 GLRBP48167 497 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 ZNF140P52738 457 aaPredicted RBP8.86□□□□□ -0.99
HDDC3-204ENST00000559834 SOX8P57073 446 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 OTUD4Q01804 1114 aaKnown RBP8.86□□□□□ -0.99
HDDC3-204ENST00000559834 CACNG1Q06432 222 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 NR6A1Q15406 480 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 CYP2A13Q16696 494 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 ZNF385CQ66K41 422 aaPredicted RBP8.86□□□□□ -0.99
HDDC3-204ENST00000559834 C11orf63Q6NUN7 778 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 UNC5AQ6ZN44 842 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 MRGPREQ86SM8 312 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 SERPINA9Q86WD7 417 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 TBC1D21Q8IYX1 336 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 GALNT16Q8N428 558 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 C19orf47Q8N9M1 422 aaKnown RBP8.86□□□□□ -0.99
HDDC3-204ENST00000559834 OR2Y1Q8NGV0 311 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 C19orf60Q96EN9 201 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 SPATA13Q96N96 652 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 OR2A14Q96R47 310 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 TTC1Q99614 292 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 GORASP1Q9BQQ3 440 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 NDC1Q9BTX1 674 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 HGH1Q9BTY7 390 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 SPRTNQ9H040 489 aaPredicted RBP8.86□□□□□ -0.99
HDDC3-204ENST00000559834 ZNF552Q9H707 407 aaPredicted RBP8.86□□□□□ -0.99
HDDC3-204ENST00000559834 AGPAT4Q9NRZ5 378 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 ASF1BQ9NVP2 202 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 P4HTMQ9NXG6 502 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 SMARCAL1Q9NZC9 954 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 PLCL2Q9UPR0 1127 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 PCDHA13Q9Y5I0 950 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 SHANK1Q9Y566 2161 aa8.86□□□□□ -0.99
HDDC3-204ENST00000559834 CACNA1DQ01668 2161 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 A0A0J9YY10 115 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 ZSCAN9O15535 394 aaPredicted RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 CHRM5P08912 532 aaPredicted RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 UGT2B7P16662 529 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 ALAS2P22557 587 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 NSG1P42857 185 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 MARCKSL1P49006 195 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 CDKN1CP49918 316 aaPredicted RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 ARSFP54793 590 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 NAP1L1P55209 391 aaKnown RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 RWDD2BP57060 319 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 AIMP2Q13155 320 aaKnown RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 OLIG2Q13516 323 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 SPARCL1Q14515 664 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 ITIH4Q14624 930 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 KIR2DS3Q14952 304 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 PARP6Q2NL67 630 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 NKAIN1Q4KMZ8 207 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 ZNF658BQ4V348 819 aaPredicted RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 C1orf189Q5VU69 101 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 IRAK1BP1Q5VVH5 260 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 DENND5AQ6IQ26 1287 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 CCDC170Q8IYT3 715 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 CLDN19Q8N6F1 224 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 ZNF655Q8N720 491 aaPredicted RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 TTC13Q8NBP0 860 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 CCDC110Q8TBZ0 833 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 COG1Q8WTW3 980 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 STYXQ8WUJ0 223 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 KRT35Q92764 455 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 DLG3Q92796 817 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 CDKN2AIPNLQ96HQ2 116 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 VPS50Q96JG6 964 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 DNAJC1Q96KC8 554 aaKnown RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 GBP5Q96PP8 586 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 OSBPL8Q9BZF1 889 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 GOLPH3Q9H4A6 298 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 FAM60AQ9NP50 221 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 NLE1Q9NVX2 485 aaPredicted RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 ERRFI1Q9UJM3 462 aaPredicted RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 ICKQ9UPZ9 632 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 TDRKHQ9Y2W6 561 aaKnown RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 PCDHA3Q9Y5H8 950 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 BSNQ9UPA5 3926 aa8.85□□□□□ -0.99
HDDC3-204ENST00000559834 USP9XQ93008 2570 aaPredicted RBP8.85□□□□□ -0.99
HDDC3-204ENST00000559834 CREBBPQ92793 2442 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 PIKFYVEQ9Y2I7 2098 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 CCDC78A2IDD5 438 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 GOLGA6L9A6NEM1 432 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 ISM1B1AKI9 464 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 H3BMH7 237 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 AGPSO00116 658 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 CCL22O00626 93 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 AP2A1O95782 977 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 LDLRP01130 860 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 ALBP02768 609 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 PTMAP06454 111 aaKnown RBP8.84□□□□□ -0.99
HDDC3-204ENST00000559834 OR56A5P0C7T3 313 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 RNF224P0DH78 156 aa8.84□□□□□ -0.99
HDDC3-204ENST00000559834 ATXN8OSP0DMR3 200 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms