RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 UBTD2Q8WUN7 234 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 RHBDF1Q96CC6 855 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 FBXL8Q96CD0 374 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 LOXL4Q96JB6 756 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 TMEM237Q96Q45 408 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 INSM2Q96T92 566 aaPredicted RBP16.43■□□□□ 0.22
SNX1-203ENST00000558040 GATA5Q9BWX5 397 aaPredicted RBP16.43■□□□□ 0.22
SNX1-203ENST00000558040 TMEM74BQ9NUR3 256 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 TAAR2Q9P1P5 351 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 POLG2Q9UHN1 485 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 PTBP2Q9UKA9 531 aaKnown RBP16.43■□□□□ 0.22
SNX1-203ENST00000558040 RAB23Q9ULC3 237 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 DOLKQ9UPQ8 538 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 COLEC10Q9Y6Z7 277 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 BDP1A6H8Y1 2624 aa16.43■□□□□ 0.22
SNX1-203ENST00000558040 OR5K4A6NMS3 321 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 SRRM3A6NNA2 597 aaPredicted RBP16.42■□□□□ 0.22
SNX1-203ENST00000558040 NPHS1O60500 1241 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 SHOX2O60902 331 aaPredicted RBP16.42■□□□□ 0.22
SNX1-203ENST00000558040 SNUPNO95149 360 aaKnown RBP16.42■□□□□ 0.22
SNX1-203ENST00000558040 VIMP08670 466 aaKnown RBP16.42■□□□□ 0.22
SNX1-203ENST00000558040 EEF1DP29692 281 aaKnown RBP16.42■□□□□ 0.22
SNX1-203ENST00000558040 ARRB1P49407 418 aaPredicted RBP16.42■□□□□ 0.22
SNX1-203ENST00000558040 BST1Q10588 318 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 CLCA4Q14CN2 919 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 PCBP2Q15366 365 aaKnown RBP eCLIP16.42■□□□□ 0.221e-12■□□□□ 8.4
SNX1-203ENST00000558040 RPE65Q16518 533 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 KIF19Q2TAC6 998 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 ZNF678Q5SXM1 525 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 ANKS6Q68DC2 871 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 OR5AR1Q8NGP9 310 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 OR9A1PQ8NGU1 263 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 OR6Y1Q8NGX8 325 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 LMX1AQ8TE12 382 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 CXorf40BQ96DE9 158 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 CHMP6Q96FZ7 201 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 CNDP1Q96KN2 507 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 FERD3LQ96RJ6 166 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 TRMOQ9BU70 441 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 C1QTNF3Q9BXJ4 246 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 THAP1Q9NVV9 213 aa16.42■□□□□ 0.22
SNX1-203ENST00000558040 CFAP20Q9Y6A4 193 aaKnown RBP16.42■□□□□ 0.22
SNX1-203ENST00000558040 TTC28Q96AY4 2481 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 KIR2DS5A0A0G2JLQ3 304 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 A0A0G2JNG1 304 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 A6NCN8 305 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 ZNF839A8K0R7 811 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 KIR2DS3K7RE56 304 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 AQP9O43315 295 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 DFNA5O60443 496 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 SUPT7LO94864 414 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 CFIP05156 583 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 RPS17P08708 135 aaKnown RBP16.41■□□□□ 0.22
SNX1-203ENST00000558040 HSD17B2P37059 387 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 SLC1A6P48664 564 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 PIK3CGP48736 1102 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 ABCE1P61221 599 aaKnown RBP16.41■□□□□ 0.22
SNX1-203ENST00000558040 CBX1P83916 185 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 C1orf61Q13536 156 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 RCN2Q14257 317 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 KIR2DS5Q14953 304 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 MBOAT1Q6ZNC8 495 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 PHC3Q8NDX5 983 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 ZNF548Q8NEK5 533 aaPredicted RBP16.41■□□□□ 0.22
SNX1-203ENST00000558040 PKP4Q99569 1192 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 HGH1Q9BTY7 390 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 RAB11FIP5Q9BXF6 653 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 DRC3Q9H069 523 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 NSRP1Q9H0G5 558 aaKnown RBP16.41■□□□□ 0.22
SNX1-203ENST00000558040 SPATA7Q9P0W8 599 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 LNPEPQ9UIQ6 1025 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 TDRKHQ9Y2W6 561 aaKnown RBP16.41■□□□□ 0.22
SNX1-203ENST00000558040 SNX11Q9Y5W9 270 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 SPAG17Q6Q759 2223 aa16.41■□□□□ 0.22
SNX1-203ENST00000558040 GMNCA6NCL1 334 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 OR52A4PA6NMU1 304 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 SNNO75324 88 aaPredicted RBP16.4■□□□□ 0.22
SNX1-203ENST00000558040 STK16O75716 305 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 PIAS2O75928 621 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 SIX3O95343 332 aaPredicted RBP16.4■□□□□ 0.22
SNX1-203ENST00000558040 HSPA4LO95757 839 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 ANXA6P08133 673 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 GGT5P36269 586 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 RXRGP48443 463 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 HSPA7P48741 367 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 AGTR2P50052 363 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 ARHGAP19Q14CB8 494 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 UNC50Q53HI1 259 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 DUS1LQ6P1R4 473 aaKnown RBP16.4■□□□□ 0.22
SNX1-203ENST00000558040 IYDQ6PHW0 289 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 IL27RAQ6UWB1 636 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 FRMD7Q6ZUT3 714 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 LRRC70Q7Z2Q7 622 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 TRIM48Q8IWZ4 208 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 AVL9Q8NBF6 648 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 FAM46DQ8NEK8 389 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 C7orf26Q96N11 449 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 ELF4Q99607 663 aaPredicted RBP16.4■□□□□ 0.22
SNX1-203ENST00000558040 PRRX2Q99811 253 aa16.4■□□□□ 0.22
SNX1-203ENST00000558040 TMEM79Q9BSE2 394 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms