RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SPIDRQ14159 915 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 PON2Q15165 354 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 SF1Q15637 639 aaKnown RBP12.61□□□□□ -0.39
LDLR-207ENST00000558013 DPY19L1Q2PZI1 675 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 GPRC6AQ5T6X5 926 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 ACBD5Q5T8D3 534 aaPredicted RBP12.61□□□□□ -0.39
LDLR-207ENST00000558013 KIAA1841Q6NSI8 718 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 ZNF773Q6PK81 442 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 CHST9Q7L1S5 443 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 NECAB2Q7Z6G3 386 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 GPR26Q8NDV2 337 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 SKA2Q8WVK7 121 aaPredicted RBP12.61□□□□□ -0.39
LDLR-207ENST00000558013 MYLIPQ8WY64 445 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 PLD4Q96BZ4 506 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 DOK1Q99704 481 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 MYOCQ99972 504 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 ACPTQ9BZG2 426 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 CWH43Q9H720 699 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 LRTM1Q9HBL6 345 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 MAGEE1Q9HCI5 957 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 CDH7Q9ULB5 785 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 ABT1Q9ULW3 272 aaKnown RBP12.61□□□□□ -0.39
LDLR-207ENST00000558013 VPS4AQ9UN37 437 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 DNAH14Q0VDD8 3507 aa12.61□□□□□ -0.39
LDLR-207ENST00000558013 ELOVL7A1L3X0 281 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 NPIPB15A6NHN6 443 aaPredicted RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 MANBAO00462 879 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 XPNPEP2O43895 674 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 HS6ST1O60243 411 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 GLUD1P00367 558 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 NPPAP01160 153 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 SELPP16109 830 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 AKT1P31749 480 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 GNPDA1P46926 289 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 STK19P49842 368 aaPredicted RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 BMXP51813 675 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 CCL23P55773 120 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 NAA20P61599 178 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 THAP5Q7Z6K1 395 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 STK40Q8N2I9 435 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 ZBTB2Q8N680 514 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 ULK4Q96C45 1275 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 PPP3R2Q96LZ3 170 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 PLGRKTQ9HBL7 147 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 PAK1IP1Q9NWT1 392 aaPredicted RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 CRLS1Q9UJA2 301 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 EIF3LQ9Y262 564 aaKnown RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 OARD1Q9Y530 152 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 H0YAE9 185 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 TULP3O75386 442 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 MTX2O75431 263 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 GMNNO75496 209 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 ZBTB11O95625 1053 aaPredicted RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 SERPINA1P01009 418 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 PDYNP01213 254 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 CYP4B1P13584 511 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 MAP4P27816 1152 aaKnown RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 CTSOP43234 321 aaPredicted RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 PLA2G16P53816 162 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 ILF2Q12905 390 aaKnown RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 PIWIL3Q7Z3Z3 882 aaKnown RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 SPARTQ8N0X7 666 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 CHDHQ8NE62 594 aaPredicted RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 OR8J3Q8NGG0 315 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 CNIH3Q8TBE1 160 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 RHNO1Q9BSD3 238 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 GLYATL1P3A0A0U1RQE8 302 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 SH3PXD2BA1X283 911 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 RGS14O43566 566 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 SH3BGRLO75368 114 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 TRBC1P01850 177 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 ACRV1P26436 265 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 TUFMP49411 452 aaKnown RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 ALDH7A1P49419 539 aaKnown RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 TPD52P55327 224 aaPredicted RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 PPP2R2BQ00005 443 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 IL1RL1Q01638 556 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 CDKN3Q16667 212 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 PGS1Q32NB8 556 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 DGKKQ5KSL6 1271 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 DEFB128Q7Z7B8 93 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 RBFAQ8N0V3 343 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 GIPC3Q8TF64 312 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 BEGAINQ9BUH8 593 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 OSBPL10Q9BXB5 764 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 KAT8Q9H7Z6 458 aaKnown RBP12.6□□□□□ -0.39
LDLR-207ENST00000558013 GPRC5BQ9NZH0 403 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 DOLKQ9UPQ8 538 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 ERVK-11Q9UQG0 969 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 PCDHB1Q9Y5F3 818 aa12.6□□□□□ -0.39
LDLR-207ENST00000558013 E2F6O75461 281 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 CPNE6O95741 557 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 VAC14Q08AM6 782 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 HSPA14Q0VDF9 509 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 RUNDC3AQ59EK9 446 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.59□□□□□ -0.399e-8■■■■□ 21.8
LDLR-207ENST00000558013 SNX20Q7Z614 316 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 BTLAQ7Z6A9 289 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 NPAS4Q8IUM7 802 aa12.59□□□□□ -0.39
LDLR-207ENST00000558013 VRK3Q8IV63 474 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms