RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 DCP2Q8IU60 420 aaKnown RBP12.09□□□□□ -0.47
LDLR-205ENST00000557933 POC5Q8NA72 575 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 ZNF548Q8NEK5 533 aaPredicted RBP12.09□□□□□ -0.47
LDLR-205ENST00000557933 BRSK1Q8TDC3 778 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 MUL1Q969V5 352 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 RHBDF1Q96CC6 855 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 EBPLQ9BY08 206 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 MAGEE1Q9HCI5 957 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 BOLA1Q9Y3E2 137 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 LOC285095A0A1B0GVY8 99 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 ELOVL7A1L3X0 281 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 LCHNA4D1U4 455 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 CYP7B1O75881 506 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 PRR35P0CG20 571 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 IGFBP5P24593 272 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 DNAJB1P25685 340 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 THPOP40225 353 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 SGSHP51688 502 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 FCGRTP55899 365 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 PHC1P78364 1004 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 DEFB115Q30KQ5 88 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 UAP1L1Q3KQV9 507 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 VARS2Q5ST30 1063 aaKnown RBP12.09□□□□□ -0.47
LDLR-205ENST00000557933 GPR153Q6NV75 609 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 FAM171BQ6P995 826 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 CD300LGQ6UXG3 332 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 SPATA19Q7Z5L4 167 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 P2RY8Q86VZ1 359 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 PAPD5Q8NDF8 572 aaKnown RBP12.09□□□□□ -0.47
LDLR-205ENST00000557933 GTF2H4Q92759 462 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 ACBD6Q9BR61 282 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 TM6SF2Q9BZW4 377 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 RUBCNLQ9H714 662 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 AKIP1Q9NQ31 210 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 MARCH2Q9P0N8 246 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 TMEM9Q9P0T7 183 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 SCHIP1Q9P0W5 487 aaPredicted RBP12.09□□□□□ -0.47
LDLR-205ENST00000557933 TMEFF2Q9UIK5 374 aaPredicted RBP12.09□□□□□ -0.47
LDLR-205ENST00000557933 INTS6Q9UL03 887 aaKnown RBP12.09□□□□□ -0.47
LDLR-205ENST00000557933 PKP3Q9Y446 797 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 ANGPTL3Q9Y5C1 460 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 PCDHGA10Q9Y5H3 936 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 NINQ8N4C6 2090 aa12.09□□□□□ -0.47
LDLR-205ENST00000557933 C16orf96A6NNT2 1141 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 NT5C1B-RDH14C9J2C7 533 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 PER2O15055 1255 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 VPS26AO75436 327 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 PKMP14618 531 aaKnown RBP12.08□□□□□ -0.48
LDLR-205ENST00000557933 TAF10Q12962 218 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 EIF4EBP2Q13542 120 aaPredicted RBP12.08□□□□□ -0.48
LDLR-205ENST00000557933 LRRC8DQ7L1W4 858 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 NECAB2Q7Z6G3 386 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 PROSER1Q86XN7 944 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 ANKRD13BQ86YJ7 626 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 PLD3Q8IV08 490 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 KLHDC8BQ8IXV7 354 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 EID3Q8N140 333 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 HDAC2Q92769 488 aaKnown RBP12.08□□□□□ -0.48
LDLR-205ENST00000557933 TPD52L3Q96J77 140 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 SERPINB11Q96P15 392 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 ADAM2Q99965 735 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 DPY30Q9C005 99 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 BRINP2Q9C0B6 783 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 DERL2Q9GZP9 239 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 EHD1Q9H4M9 534 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 RERGLQ9H628 205 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 SYTL2Q9HCH5 934 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 DNAJB9Q9UBS3 223 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 AGO1Q9UL18 857 aaKnown RBP12.08□□□□□ -0.48
LDLR-205ENST00000557933 DLGAP4Q9Y2H0 992 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 WDR37Q9Y2I8 494 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 SNX8Q9Y5X2 465 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 M0QZ92 97 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 AREL1O15033 823 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 NDUFB5O43674 189 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 FAM20BO75063 409 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 FKBP9O95302 570 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 UGT2B4P06133 528 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 PGRP06401 933 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 UMPSP11172 480 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 COL6A1P12109 1028 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 HOXC13P31276 330 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 OR1G1P47890 313 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 SERINC3Q13530 473 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 GTF2H2Q13888 395 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 GNASQ5JWF2 1037 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 ZNF648Q5T619 568 aaPredicted RBP12.08□□□□□ -0.48
LDLR-205ENST00000557933 ATXN7L2Q5T6C5 722 aaPredicted RBP12.08□□□□□ -0.48
LDLR-205ENST00000557933 AFMIDQ63HM1 303 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 NADSYN1Q6IA69 706 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 GDF6Q6KF10 455 aaPredicted RBP12.08□□□□□ -0.48
LDLR-205ENST00000557933 GTF2H2CQ6P1K8 395 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 FKBP9P1Q75LS8 142 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 ZNF551Q7Z340 670 aaPredicted RBP12.08□□□□□ -0.48
LDLR-205ENST00000557933 NANOGNBQ7Z5D8 188 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 UMODL1-AS1Q8N2C9 162 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 MFSD4AQ8N468 514 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 OR52J3Q8NH60 311 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 RHEBL1Q8TAI7 183 aa12.08□□□□□ -0.48
LDLR-205ENST00000557933 FBXO32Q969P5 355 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms