RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 KLHL18O94889 574 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 PABPC1P11940 636 aaKnown RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 PKMP14618 531 aaKnown RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 SMPD1P17405 629 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 SLC6A2P23975 617 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 VARSP26640 1264 aaKnown RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 BUD31P41223 144 aaPredicted RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ATP12AP54707 1039 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ACSM2AQ08AH3 577 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 LRRC73Q5JTD7 316 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ACSM2BQ68CK6 577 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 CDC73Q6P1J9 531 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 KIAA0408Q6ZU52 694 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 CYP2U1Q7Z449 544 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 IZUMO1Q8IYV9 350 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ZNF614Q8N883 585 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 NFKBIDQ8NI38 313 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ZNF675Q8TD23 568 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ANKRD49Q8WVL7 239 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 IRGQQ8WZA9 623 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 C1GALT1C1Q96EU7 318 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 UROC1Q96N76 676 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 CDK5RAP1Q96SZ6 601 aaKnown RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 DIABLOQ9NR28 239 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 SEMA3GQ9NS98 782 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 OSER1Q9NX31 292 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 PTBP2Q9UKA9 531 aaKnown RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ST3GAL5Q9UNP4 418 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 MRPS7Q9Y2R9 242 aaKnown RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 PPP2R3BQ9Y5P8 575 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 HS3ST4Q9Y661 456 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 PTCH2Q9Y6C5 1203 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 GLYATL1P3A0A0U1RQE8 302 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ILVBLA1L0T0 632 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 HTR3EA5X5Y0 456 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 H0YJX3 145 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 DCLK1O15075 740 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 NPM3O75607 178 aaKnown RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 CREG1O75629 220 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 CD52P31358 61 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 DPP6P42658 865 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 TUFMP49411 452 aaKnown RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 GABARAPL2P60520 117 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 HSF2Q03933 536 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 SLC13A2Q13183 592 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 SLC36A3Q495N2 470 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ATXN7L2Q5T6C5 722 aaPredicted RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 CES5AQ6NT32 575 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 B3GNT8Q7Z7M8 397 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ADAMTSL2Q86TH1 951 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 FAM217AQ8IXS0 508 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 TMEM102Q8N9M5 508 aaPredicted RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 OR10G2Q8NGC3 310 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ZNF671Q8TAW3 534 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 MRGPRX2Q96LB1 330 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 SLC30A3Q99726 388 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 MCUBQ9NWR8 336 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 SPG21Q9NZD8 308 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ZIM2Q9NZV7 527 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 COMMD3Q9UBI1 195 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ENPP5Q9UJA9 477 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 FZD4Q9ULV1 537 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 SPEF1Q9Y4P9 236 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ISPDA4D126 451 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 GABRDO14764 452 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 GJB3O75712 270 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 RGS20O76081 388 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 CCNDBP1O95273 360 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 C1RP00736 705 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 HPRP00739 348 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ALPIP09923 528 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ZNF24P17028 368 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 HOXB8P17481 243 aaPredicted RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 GGT1P19440 569 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 HTR2BP41595 481 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 NOVP48745 357 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 CLCN2P51788 898 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ZXDBP98169 803 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 PARP15Q460N3 678 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 TMPRSS11AQ6ZMR5 421 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 MBOAT1Q6ZNC8 495 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ASB18Q6ZVZ8 466 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 USP45Q70EL2 814 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 HS3ST5Q8IZT8 346 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 LEMD2Q8NC56 503 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 JPH3Q8WXH2 748 aaPredicted RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 TMEM159Q96B96 161 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 PPCDCQ96CD2 204 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 SIPA1Q96FS4 1042 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ZNF486Q96H40 463 aaPredicted RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ART5Q96L15 291 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ZNF597Q96LX8 424 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 NLNQ9BYT8 704 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 MMP28Q9H239 520 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 MAGED1Q9Y5V3 778 aaPredicted RBP4.89□□□□□ -1.63
SYNE2-223ENST00000557005 ARFGEF1Q9Y6D6 1849 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 A0A1B0GTW7 788 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 A0A1W2PP18 115 aa4.89□□□□□ -1.63
SYNE2-223ENST00000557005 A6NL46 340 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms