RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 LOC101059948A0A1B0GTJ6 334 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 HHLA1C9JL84 531 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 PIGNO95427 931 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 ADRB2P07550 413 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 LDHCP07864 332 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 ABCB1P08183 1280 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-221ENST00000556534 PLA2G4BP0C869 781 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 AKR1B1P15121 316 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 IL11P20809 199 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 CEACAM8P31997 349 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-221ENST00000556534 WNT5AP41221 380 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 MATR3P43243 847 aaKnown RBP eCLIP4.11□□□□□ -1.75
SCFD1-221ENST00000556534 LIG4P49917 911 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 IRX6P78412 446 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-221ENST00000556534 SNAPC1Q16533 368 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 CEP85LQ5SZL2 805 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 PRPF39Q86UA1 669 aaKnown RBP4.11□□□□□ -1.75
SCFD1-221ENST00000556534 COMMD2Q86X83 199 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 CFAP206Q8IYR0 622 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 NPEPL1Q8NDH3 523 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 TMEM143Q96AN5 459 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 PTERQ96BW5 349 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 SPDL1Q96EA4 605 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 ZNF830Q96NB3 372 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-221ENST00000556534 FNBP1Q96RU3 617 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 APOL6Q9BWW8 343 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 BARHL1Q9BZE3 327 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 TMX4Q9H1E5 349 aaPredicted RBP4.11□□□□□ -1.75
SCFD1-221ENST00000556534 WNT5BQ9H1J7 359 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 ANKZF1Q9H8Y5 726 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 FLRT3Q9NZU0 649 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 B3GAT1Q9P2W7 334 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 ANAPC2Q9UJX6 822 aa4.11□□□□□ -1.75
SCFD1-221ENST00000556534 A0A087X002 238 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 hCG_1809904A0A1W2PP81 198 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 A0A1W2PPE2 198 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 A0A1W2PR64 198 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 FAM157CP0CG43 387 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 SLC9A3P48764 834 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 LMAN1P49257 510 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 MAT1AQ00266 395 aaKnown RBP4.1□□□□□ -1.75
SCFD1-221ENST00000556534 PRKCZQ05513 592 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 GTDC1Q4AE62 458 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 KLHL26Q53HC5 615 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 SPDYCQ5MJ68 293 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 FFAR4Q5NUL3 377 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 ELFN2Q5R3F8 820 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 SLC16A9Q7RTY1 509 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 MAPKAPK5-AS1Q8N8E1 139 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 IRGQQ8WZA9 623 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 ASCL2Q99929 193 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 CCDC106Q9BWC9 280 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 S1PR5Q9H228 398 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 SDR39U1Q9NRG7 319 aaPredicted RBP4.1□□□□□ -1.75
SCFD1-221ENST00000556534 OLAHQ9NV23 265 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 PRMT7Q9NVM4 692 aaPredicted RBP4.1□□□□□ -1.75
SCFD1-221ENST00000556534 DPP3Q9NY33 737 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 KCNK7Q9Y2U2 307 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 TRPV2Q9Y5S1 764 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 PCDH11YQ9BZA8 1340 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 DISP3Q9P2K9 1392 aa4.1□□□□□ -1.75
SCFD1-221ENST00000556534 A0A1W2PPM1 405 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 NTN3O00634 580 aaPredicted RBP4.09□□□□□ -1.75
SCFD1-221ENST00000556534 PRKRAO75569 313 aaKnown RBP4.09□□□□□ -1.75
SCFD1-221ENST00000556534 TRMUO75648 421 aaKnown RBP4.09□□□□□ -1.75
SCFD1-221ENST00000556534 EML2O95834 649 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 LINGO3P0C6S8 592 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 CEACAM1P13688 526 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 RAD52P43351 418 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 UBXN2AP68543 259 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 TOMM20Q15388 145 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 PHLDA2Q53GA4 152 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 ARHGEF16Q5VV41 709 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 TMPRSS11BQ86T26 416 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 ZBTB8BQ8NAP8 495 aaPredicted RBP4.09□□□□□ -1.75
SCFD1-221ENST00000556534 AVL9Q8NBF6 648 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 ADAD2Q8NCV1 583 aaKnown RBP4.09□□□□□ -1.75
SCFD1-221ENST00000556534 TSPAN14Q8NG11 270 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 OR2T11Q8NH01 316 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 CCDC107Q8WV48 283 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 SLAMF9Q96A28 289 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 DHX58Q96C10 678 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 NXNL1Q96CM4 212 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 NSL1Q96IY1 281 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 SERINC1Q9NRX5 453 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 TMEM181Q9P2C4 612 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 NRBP1Q9UHY1 535 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 RIPK3Q9Y572 518 aa4.09□□□□□ -1.75
SCFD1-221ENST00000556534 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 TCRBV21S2A2A0A5A6 115 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 NR5A2O00482 541 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 MEIS2O14770 477 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 TRUB2O95900 331 aaKnown RBP4.08□□□□□ -1.76
SCFD1-221ENST00000556534 EDN1P05305 212 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 PFKFB1P16118 471 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 MPZP25189 248 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 PTPN3P26045 913 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 PMP22Q01453 160 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 HSPB3Q12988 150 aa4.08□□□□□ -1.76
SCFD1-221ENST00000556534 SNTB1Q13884 538 aaKnown RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms