RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 EPOP01588 193 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 EPORP19235 508 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 GPX3P22352 226 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 KIR3DL1P43629 444 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 MEF2AQ02078 507 aaPredicted RBP14.55□□□□□ -0.08
CUX1-215ENST00000556210 CERS6Q6ZMG9 384 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 ADHFE1Q8IWW8 467 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 CFAP206Q8IYR0 622 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 NUDT4Q9NZJ9 180 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 ACTR3BQ9P1U1 418 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 TRPC4Q9UBN4 977 aa14.55□□□□□ -0.08
CUX1-215ENST00000556210 ASCC3Q8N3C0 2202 aaKnown RBP14.54□□□□□ -0.08
CUX1-215ENST00000556210 K7EPI3 171 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 CXCR6O00574 342 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 PER2O15055 1255 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 AP1G1O43747 822 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 CAMK2GQ13555 558 aaPredicted RBP14.54□□□□□ -0.08
CUX1-215ENST00000556210 RFTN1Q14699 578 aaPredicted RBP14.54□□□□□ -0.08
CUX1-215ENST00000556210 MEP1AQ16819 746 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 CNTN4Q8IWV2 1026 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 ZNF540Q8NDQ6 660 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 RORBQ92753 470 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 NSMCE3Q96MG7 304 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 EMILIN2Q9BXX0 1053 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 TUBB1Q9H4B7 451 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 CREBZFQ9NS37 354 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 WNT6Q9Y6F9 365 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 MYO10Q9HD67 2058 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 FAM234BA2RU67 622 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 RGS5O15539 181 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 RFPL2O75678 378 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 DLGAP3O95886 979 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 PGRP06401 933 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 FMO3P31513 532 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 CD70P32970 193 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 GPC1P35052 558 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 CAPGP40121 348 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 MAGEA11P43364 429 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 RPS14P62263 151 aaKnown RBP14.54□□□□□ -0.08
CUX1-215ENST00000556210 ARHGAP15Q53QZ3 475 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 BLOC1S3Q6QNY0 202 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 CEP19Q96LK0 163 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 ATOH8Q96SQ7 321 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 FAM83DQ9H4H8 585 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 IGFLR1Q9H665 355 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 ZNF556Q9HAH1 456 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 DDX28Q9NUL7 540 aaKnown RBP14.54□□□□□ -0.08
CUX1-215ENST00000556210 MAGEL2Q9UJ55 1249 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 PCTPQ9UKL6 214 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 PCDHB1Q9Y5F3 818 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 GMPPBQ9Y5P6 360 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 LOC285095A0A1B0GVY8 99 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 ZNF12P17014 697 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 FUT4P22083 530 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 VARSP26640 1264 aaKnown RBP14.54□□□□□ -0.08
CUX1-215ENST00000556210 NFATC2Q13469 925 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 ZNF829Q3KNS6 432 aaPredicted RBP14.54□□□□□ -0.08
CUX1-215ENST00000556210 FGD3Q5JSP0 725 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 DPY19L3Q6ZPD9 716 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 CD200R1Q8TD46 325 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 IGSF21Q96ID5 467 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 ZNF599Q96NL3 588 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 RANBP9Q96S59 729 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 SGK2Q9HBY8 427 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 IFT80Q9P2H3 777 aaPredicted RBP14.54□□□□□ -0.08
CUX1-215ENST00000556210 IKZF3Q9UKT9 509 aa14.54□□□□□ -0.08
CUX1-215ENST00000556210 TBC1D3BA6NDS4 549 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 CHRM5P08912 532 aaPredicted RBP14.53□□□□□ -0.08
CUX1-215ENST00000556210 ELFN1P0C7U0 828 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 ZNF26P17031 533 aaPredicted RBP14.53□□□□□ -0.08
CUX1-215ENST00000556210 FNDC3BQ53EP0 1204 aaKnown RBP14.53□□□□□ -0.08
CUX1-215ENST00000556210 SNX20Q7Z614 316 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 CHERPQ8IWX8 916 aaKnown RBP14.53□□□□□ -0.08
CUX1-215ENST00000556210 CENPSQ8N2Z9 138 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 WFDC5Q8TCV5 224 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 HPS1Q92902 700 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 C1orf109Q9NX04 203 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 MAP10Q9P2G4 905 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 SLC13A4Q9UKG4 626 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 PRSS21Q9Y6M0 314 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 FADS2O95864 444 aaKnown RBP14.53□□□□□ -0.08
CUX1-215ENST00000556210 TRBC1P01850 177 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 CATP04040 527 aaKnown RBP14.53□□□□□ -0.08
CUX1-215ENST00000556210 MAGEA12P43365 314 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 POLR2LP62875 67 aaKnown RBP14.53□□□□□ -0.08
CUX1-215ENST00000556210 DSC3Q14574 896 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 ANKDD1AQ495B1 522 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 TRIM60Q495X7 471 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 ATP13A5Q4VNC0 1218 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 ARSIQ5FYB1 569 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 TMEM102Q8N9M5 508 aaPredicted RBP14.53□□□□□ -0.08
CUX1-215ENST00000556210 OR5AK3PQ8NH89 298 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 KCNJ9Q92806 393 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 FOXJ1Q92949 421 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 PLD4Q96BZ4 506 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 REEP1Q9H902 201 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 ZNF451Q9Y4E5 1061 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 PNMA8CA0A1B0GUJ8 204 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 SLC28A1O00337 649 aa14.53□□□□□ -0.08
CUX1-215ENST00000556210 GPIP06744 558 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms