RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 DCDC2Q9UHG0 476 aa10.65□□□□□ -0.7
SHMT2-218ENST00000555213 TRMT6Q9UJA5 497 aaKnown RBP10.65□□□□□ -0.7
SHMT2-218ENST00000555213 RNF215Q9Y6U7 377 aa10.65□□□□□ -0.7
SHMT2-218ENST00000555213 COLEC10Q9Y6Z7 277 aa10.65□□□□□ -0.7
SHMT2-218ENST00000555213 U3KQA8 63 aa10.65□□□□□ -0.7
SHMT2-218ENST00000555213 TDRD6O60522 2096 aaKnown RBP10.64□□□□□ -0.71
SHMT2-218ENST00000555213 TRBV23OR9-2A0A075B6M9 112 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 SLC5A10A0PJK1 596 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 COPEO14579 308 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 ZWINTO95229 277 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 PROCP04070 461 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 MYF5P13349 255 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 ENO3P13929 434 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-218ENST00000555213 CD9P21926 228 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 LSP1P33241 339 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 SKIV2L2P42285 1042 aaKnown RBP10.64□□□□□ -0.71
SHMT2-218ENST00000555213 MAPK9P45984 424 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 GPR3P46089 330 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 KCNC1P48547 511 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 CCT5P48643 541 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 SERPINB8P50452 374 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 SLC12A2P55011 1212 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 RAB10P61026 200 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 UBE2IP63279 158 aaKnown RBP10.64□□□□□ -0.71
SHMT2-218ENST00000555213 PLCL1Q15111 1095 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 TERF2Q15554 542 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 RPE65Q16518 533 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 ZNF658BQ4V348 819 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-218ENST00000555213 ZNF438Q7Z4V0 828 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 SLC22A15Q8IZD6 547 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 CNPY4Q8N129 248 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 LILRA3Q8N6C8 439 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-218ENST00000555213 OR10G6Q8NH81 332 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 LKAAEAR1Q8TD35 194 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 MGARPQ8TDB4 240 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 FAM136AQ96C01 138 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 TSPAN17Q96FV3 270 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 ELMO2Q96JJ3 720 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 FOPNLQ96NB1 174 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 SLC30A3Q99726 388 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 CCDC3Q9BQI4 270 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 VPS11Q9H270 941 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 OR52A5Q9H2C5 316 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 TRIT1Q9H3H1 467 aaKnown RBP10.64□□□□□ -0.71
SHMT2-218ENST00000555213 EPB41L1Q9H4G0 881 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 MVB12BQ9H7P6 319 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 UCK1Q9HA47 277 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 KCNK4Q9NYG8 393 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 SCHIP1Q9P0W5 487 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-218ENST00000555213 WDR37Q9Y2I8 494 aa10.64□□□□□ -0.71
SHMT2-218ENST00000555213 LILRA5A6NI73 299 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 EIF3FO00303 357 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 GIPC1O14908 333 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 TM9SF1O15321 606 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 DUX1O43812 170 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 RRP9O43818 475 aaKnown RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 PLIN3O60664 434 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 SLCO2B1O94956 709 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 RPLP0P05388 317 aaKnown RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 GSTA1P08263 222 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 COL6A2P12110 1019 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 STMN1P16949 149 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 TAC1P20366 129 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 SAT1P21673 171 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 CRABP2P29373 138 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 PDHA2P29803 388 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 ALDH4A1P30038 563 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 RGS4P49798 205 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 CLCN7P51798 805 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 SEC24CP53992 1094 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 EPHA4P54764 986 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 GNGT1P63211 74 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 GPLD1P80108 840 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 PDAP1Q13442 181 aaKnown RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 SPIDRQ14159 915 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 NR1D2Q14995 579 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 CLCA4Q14CN2 919 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 N4BP2L1Q5TBK1 243 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 CAPRIN2Q6IMN6 1127 aaKnown RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 TTC23LQ6PF05 361 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 KLHL35Q6PF15 583 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 UNC5DQ6UXZ4 953 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 ATG14Q6ZNE5 492 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 SPRED1Q7Z699 444 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 PIM3Q86V86 326 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 SFTPA2Q8IWL1 248 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 SPATA6LQ8N4H0 392 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 Q8N9G6 341 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 SIDT2Q8NBJ9 832 aaKnown RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 SPDYE1Q8NFV5 336 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 OR6Y1Q8NGX8 325 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 KCTD4Q8WVF5 259 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 ZFPM2Q8WW38 1151 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 TFGQ92734 400 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 INPP5DQ92835 1189 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 NXNL1Q96CM4 212 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 AHCYL2Q96HN2 611 aaKnown RBP10.63□□□□□ -0.71
SHMT2-218ENST00000555213 FAM111AQ96PZ2 611 aa10.63□□□□□ -0.71
SHMT2-218ENST00000555213 INSM2Q96T92 566 aaPredicted RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms