RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 AP3B1O00203 1094 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 AREL1O15033 823 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TSPAN6O43657 245 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 LDB2O43679 373 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 BUD23O43709 281 aaKnown RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PRAMEF4O60810 478 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PAPSS2O95340 614 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 DNTTP04053 509 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TUBBP07437 444 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PF4V1P10720 104 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 LHCGRP22888 699 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ADRA1DP25100 572 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PSMA3P25788 255 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ADSLP30566 484 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ELK3P41970 407 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 MAGEA9P43362 315 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TNNT3P45378 269 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 SUOXP51687 545 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 NEK3P51956 506 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ZNF140P52738 457 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 STC1P52823 247 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 RAC3P60763 192 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 POLR2LP62875 67 aaKnown RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ZBTB16Q05516 673 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 MGAT2Q10469 447 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 RALGDSQ12967 914 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PDIA2Q13087 525 aaKnown RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TAF1AQ15573 450 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ZXDCQ2QGD7 858 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 C3orf36Q3SXR2 165 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 CCDC38Q502W7 563 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PCID2Q5JVF3 399 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TMEM31Q5JXX7 168 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 CFAP58Q5T655 872 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 UBAP2Q5T6F2 1119 aaKnown RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ANO7Q6IWH7 933 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 CRTC1Q6UUV9 634 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 RFLNAQ6ZTI6 216 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 MICALCLQ6ZW33 695 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 USP45Q70EL2 814 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 CENPUQ71F23 418 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 DPPA4Q7L190 304 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TTC7BQ86TV6 843 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 CCDC25Q86WR0 208 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PDIK1LQ8N165 341 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PAF1Q8N7H5 531 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 MDGA1Q8NFP4 955 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TSTD1Q8NFU3 115 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 BRSK1Q8TDC3 778 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 BLOC1S5Q8TDH9 187 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 AENQ8WTP8 325 aaKnown RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 RAB7BQ96AH8 199 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 LRRC39Q96DD0 335 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 HSPBAP1Q96EW2 488 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 STAMBPL1Q96FJ0 436 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PPP1R16AQ96I34 528 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ZNF778Q96MU6 729 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 GNRHR2Q96P88 292 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 RANBP9Q96S59 729 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 EBNA1BP2Q99848 306 aaKnown RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 KIFC1Q9BW19 673 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 IL22Q9GZX6 179 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TSPYL1Q9H0U9 437 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TRABDQ9H4I3 376 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 MRM3Q9HC36 420 aaKnown RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ITM2CQ9NQX7 267 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 DYRK4Q9NR20 520 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 FBXL12Q9NXK8 326 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 BFARQ9NZS9 450 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 HACD3Q9P035 362 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 MTRF1LQ9UGC7 380 aaKnown RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 SLC2A6Q9UGQ3 507 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TRPS1Q9UHF7 1281 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 SCML1Q9UN30 329 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 CHMP2BQ9UQN3 213 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ANKRD6Q9Y2G4 727 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ZNF711Q9Y462 761 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 TCAF1Q9Y4C2 921 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 FADS3Q9Y5Q0 445 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ARL5AQ9Y689 179 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 ZNF106Q9H2Y7 1883 aaKnown RBP6.25□□□□□ -1.41
SCFD1-212ENST00000554486 CUL9Q8IWT3 2517 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 SDK1Q7Z5N4 2213 aa6.25□□□□□ -1.41
SCFD1-212ENST00000554486 PLXNA2O75051 1894 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 SPAG17Q6Q759 2223 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 UQCRHLA0A096LP55 91 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 C1orf232A0A0U1RR37 186 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 FAM237BA0A1B0GVD1 139 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 CCDC78A2IDD5 438 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 C10orf142B7Z368 130 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 GPR42O15529 346 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 SLC7A4O43246 635 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 PLRG1O43660 514 aaKnown RBP6.24□□□□□ -1.41
SCFD1-212ENST00000554486 AP1G1O43747 822 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 RNASEH2AO75792 299 aaKnown RBP6.24□□□□□ -1.41
SCFD1-212ENST00000554486 CLDN7O95471 211 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 APBB3O95704 486 aa6.24□□□□□ -1.41
SCFD1-212ENST00000554486 IGLV3-19P01714 112 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms