RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 IGFL3Q6UXB1 125 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 FAM83HQ6ZRV2 1179 aaPredicted RBP7.08□□□□□ -1.28
ATXN3-219ENST00000553488 TMC3Q7Z5M5 1100 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 MRGPREQ86SM8 312 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 RELL1Q8IUW5 271 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 SYTL1Q8IYJ3 562 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 CISD2Q8N5K1 135 aaKnown RBP7.08□□□□□ -1.28
ATXN3-219ENST00000553488 NIPA2Q8N8Q9 360 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 ST6GALNAC3Q8NDV1 305 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 OR8K5Q8NH50 307 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 CCHCR1Q8TD31 782 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 UBE2Q2Q8WVN8 375 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 ZNF653Q96CK0 615 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 PPM1MQ96MI6 270 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 TSGA13Q96PP4 275 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 VPS35Q96QK1 796 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 MLPHQ9BV36 600 aaPredicted RBP7.08□□□□□ -1.28
ATXN3-219ENST00000553488 UNKQ9C0B0 810 aaKnown RBP7.08□□□□□ -1.28
ATXN3-219ENST00000553488 SEMA3GQ9NS98 782 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 RBM22Q9NW64 420 aaKnown RBP eCLIP7.08□□□□□ -1.28
ATXN3-219ENST00000553488 TRIM10Q9UDY6 481 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 LIMA1Q9UHB6 759 aaKnown RBP7.08□□□□□ -1.28
ATXN3-219ENST00000553488 B3GNT3Q9Y2A9 372 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 POLR3KQ9Y2Y1 108 aaPredicted RBP7.08□□□□□ -1.28
ATXN3-219ENST00000553488 ZNF711Q9Y462 761 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 TTLL3Q9Y4R7 772 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 SCINQ9Y6U3 715 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 SPG11Q96JI7 2443 aa7.08□□□□□ -1.28
ATXN3-219ENST00000553488 ARHGAP10A1A4S6 786 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 DDX3XO00571 662 aaKnown RBP eCLIP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CDK14O94921 469 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 LCA5LO95447 670 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 ZBTB11O95625 1053 aaPredicted RBP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 SLC4A1P02730 911 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 FTLP02792 175 aaPredicted RBP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 PIRTP0C851 137 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 GZMAP12544 262 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 BPIP17213 487 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CCNCP24863 283 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 KPNA2P52292 529 aaKnown RBP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CTSCP53634 463 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 RRADP55042 308 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 PDE1BQ01064 536 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CDK18Q07002 472 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 ZBTB17Q13105 803 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 DPYSL3Q14195 570 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 BECN1Q14457 450 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 NCF4Q15080 339 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 ZRSR2Q15696 482 aaKnown RBP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 RPE65Q16518 533 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CCDC183Q5T5S1 534 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 DUS1LQ6P1R4 473 aaKnown RBP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 FBXO38Q6PIJ6 1188 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 SPOCD1Q6ZMY3 1216 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 Q6ZS92 163 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 ZNF571Q7Z3V5 609 aaPredicted RBP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CUZD1Q86UP6 607 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 TRAPPC5Q8IUR0 188 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CARFQ8N187 725 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CNTD1Q8N815 330 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 DNAJB8Q8NHS0 232 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CPT1BQ92523 772 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 FAF2Q96CS3 445 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 HDAC11Q96DB2 347 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 TLR10Q9BXR5 811 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 HSD3B7Q9H2F3 369 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 ZNF552Q9H707 407 aaPredicted RBP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 KCND1Q9NSA2 647 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 FANCLQ9NW38 375 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 ADAMTS6Q9UKP5 1117 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 MYO6Q9UM54 1294 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 G3BP2Q9UN86 482 aaKnown RBP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 SHOC2Q9UQ13 582 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CAPN6Q9Y6Q1 641 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 MAP1AP78559 2803 aaPredicted RBP7.07□□□□□ -1.28
ATXN3-219ENST00000553488 CPAMD8Q8IZJ3 1885 aa7.07□□□□□ -1.28
ATXN3-219ENST00000553488 UBA6A0AVT1 1052 aaPredicted RBP7.06□□□□□ -1.28
ATXN3-219ENST00000553488 LRRC53A6NM62 1247 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 AURKAO14965 403 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 GPR39O43194 453 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 KLF7O75840 302 aaPredicted RBP7.06□□□□□ -1.28
ATXN3-219ENST00000553488 KLK3P07288 261 aaPredicted RBP7.06□□□□□ -1.28
ATXN3-219ENST00000553488 TPM2P07951 284 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 CCDC172P0C7W6 258 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 MSL3P1P0C860 447 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 MYBL1P10243 752 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 MTHFD1P11586 935 aaKnown RBP7.06□□□□□ -1.28
ATXN3-219ENST00000553488 CA5AP35218 305 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 PRKCIP41743 596 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 HALP42357 657 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 IFI35P80217 286 aaPredicted RBP7.06□□□□□ -1.28
ATXN3-219ENST00000553488 UBXN1Q04323 297 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 GBE1Q04446 702 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 TMEM115Q12893 351 aaPredicted RBP7.06□□□□□ -1.28
ATXN3-219ENST00000553488 SLC10A2Q12908 348 aaPredicted RBP7.06□□□□□ -1.28
ATXN3-219ENST00000553488 NFE2L1Q14494 772 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 MYBPC3Q14896 1274 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 PLCL1Q15111 1095 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 PTCHD3Q3KNS1 767 aa7.06□□□□□ -1.28
ATXN3-219ENST00000553488 ATP13A5Q4VNC0 1218 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms