RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ABRAXAS2Q15018 415 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 KIAA0040Q15053 153 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 RBBP7Q16576 425 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 DDR2Q16832 855 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ZMAT1Q5H9K5 638 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 INTS6LQ5JSJ4 861 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CYP20A1Q6UW02 462 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 GCNT7Q6ZNI0 430 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SIX5Q8N196 739 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 APH1BQ8WW43 257 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 BRI3BPQ8WY22 251 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SMARCD1Q96GM5 515 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 REXO5Q96IC2 774 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 RBM4BQ9BQ04 359 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CENPOQ9BU64 300 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 RBM4Q9BWF3 364 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ABCG8Q9H221 673 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 OR51E2Q9H255 320 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ATP13A1Q9HD20 1204 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TRPV5Q9NQA5 729 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 FAM105AQ9NUU6 356 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 MRGBPQ9NV56 204 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TMLHEQ9NVH6 421 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 HACD3Q9P035 362 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 UXTQ9UBK9 157 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 RNF112Q9ULX5 631 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 UNC80Q8N2C7 3258 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 LOC100506127A0A0U1RQW1 187 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 OR2A25A4D2G3 310 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 METTL15A6NJ78 407 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 M0QX08 132 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ERVH48-1M5A8F1 160 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TAF4O00268 1085 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 BTN3A1O00481 513 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 E2F3O00716 465 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CTDSP2O14595 271 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SLC16A6O15403 523 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CD3EAPO15446 510 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SLC7A4O43246 635 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CYP7B1O75881 506 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 HPRP00739 348 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 VIPP01282 170 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 RPS17P08708 135 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ATXN1LP0C7T5 689 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ODC1P11926 461 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 LHX1P48742 406 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TRPC1P48995 793 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 FAM189BP81408 668 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CDC42EP1Q00587 391 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 FAM174BQ3ZCQ3 159 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 BCL7AQ4VC05 210 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SLC39A12Q504Y0 691 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 RAB41Q5JT25 222 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 C10orf120Q5SQS8 335 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TMC5Q6UXY8 1006 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 FKBP9P1Q75LS8 142 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ANKRD46Q86W74 232 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 CIR1Q86X95 450 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 LRRC49Q8IUZ0 686 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PLD3Q8IV08 490 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SLC38A6Q8IZM9 456 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 DPP10Q8N608 796 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 OR7G1Q8NGA0 311 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SKA2Q8WVK7 121 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 GTF2H4Q92759 462 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 DNASE1L2Q92874 299 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PSMG2Q969U7 264 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PGAP3Q96FM1 320 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 TSPAN17Q96FV3 270 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 HMCESQ96FZ2 354 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 PDLIM5Q96HC4 596 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ADAM2Q99965 735 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 REXO4Q9GZR2 422 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 MFSD1Q9H3U5 465 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 SP140LQ9H930 580 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 AGO3Q9H9G7 860 aaKnown RBP4.76□□□□□ -1.65
LIMA1-214ENST00000552783 COMMD8Q9NX08 183 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ZMYM5Q9UJ78 669 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF451Q9Y4E5 1061 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 LTBP3Q9NS15 1303 aa4.76□□□□□ -1.65
LIMA1-214ENST00000552783 DICER1Q9UPY3 1922 aaKnown RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 ZSWIM8A7E2V4 1837 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 A0A0G2JMP0 313 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 A0A0X1KG70 313 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 H3BQ06 376 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-214ENST00000552783 hCG_2039718K7EN88 272 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CCRL2O00421 344 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CXCR6O00574 342 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 PTGESO14684 152 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 GABRDO14764 452 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 FFAR3O14843 346 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 GPR42O15529 346 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SCO2O43819 266 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 IDH3BO43837 385 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 GPR32O75388 356 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 TSPAN12O95859 305 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CAPN1P07384 714 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 CCDC159P0C7I6 412 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 SLC2A3P11169 496 aa4.75□□□□□ -1.65
LIMA1-214ENST00000552783 IGFBP5P24593 272 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms