RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 RMDN1Q96DB5 314 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 YIPF6Q96EC8 236 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SLC10A4Q96EP9 437 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SUSD3Q96L08 255 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PTPN18Q99952 460 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 MYOCQ99972 504 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 RBM4BQ9BQ04 359 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 BCL7BQ9BQE9 202 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PSD2Q9BQI7 771 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CORO1BQ9BR76 489 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SYT17Q9BSW7 474 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 RBM4Q9BWF3 364 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 WDR12Q9GZL7 423 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF408Q9H9D4 720 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 ZFP14Q9HCL3 533 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 ELOVL2Q9NXB9 296 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SCHIP1Q9P0W5 487 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SLCO3A1Q9UIG8 710 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TRMT6Q9UJA5 497 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 INTS6Q9UL03 887 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 RBMX2Q9Y388 322 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PCDHB14Q9Y5E9 798 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PCDHGC4Q9Y5F7 938 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SNX5Q9Y5X3 404 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 HTTP42858 3142 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 VWA8A3KMH1 1905 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TRBV5-3A0A0A0MS03 114 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 ELOVL7A1L3X0 281 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TTC34A8MYJ7 566 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 FFAR3O14843 346 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 GSTA4O15217 222 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SLC16A6O15403 523 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 GPR42O15529 346 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TAPBPO15533 448 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 WIPF1O43516 503 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CNOT3O75175 753 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CREG1O75629 220 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PRAMEF12O95522 483 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 ANGPTL1O95841 491 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 GUCA1CO95843 209 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SERPINA1P01009 418 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SLC2A4P14672 509 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 MC4RP32245 332 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CLK3P49761 638 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 GZMMP51124 257 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 KCNQ1P51787 676 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CLCN7P51798 805 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 IL2P60568 153 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 IL5RAQ01344 420 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SELENBP1Q13228 472 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 DGCR6Q14129 220 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SIM2Q14190 667 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 MAPK11Q15759 364 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 NPTX1Q15818 432 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 BCL2A1Q16548 175 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PARP15Q460N3 678 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 RUNDC3AQ59EK9 446 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 ALG1LQ6GMV1 187 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 AFTPHQ6ULP2 937 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SBSNQ6UWP8 590 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 GCNT7Q6ZNI0 430 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 DET1Q7L5Y6 550 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 LGI2Q8N0V4 545 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 THEM5Q8N1Q8 247 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 ATAD1Q8NBU5 361 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 OR7A2PQ8NGA2 310 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 OR6Q1Q8NGQ2 317 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 OR5K1Q8NHB7 308 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 DYNC2LI1Q8TCX1 351 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 S100ZQ8WXG8 99 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 FAM162AQ96A26 154 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PYCR2Q96C36 320 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF300Q96RE9 604 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 MGME1Q9BQP7 344 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TNKS2Q9H2K2 1166 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TRIT1Q9H3H1 467 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 NSUN3Q9H649 340 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 DCAF13Q9NV06 445 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 VPS51Q9UID3 782 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 POU2F3Q9UKI9 436 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PKP3Q9Y446 797 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PCDHGB1Q9Y5G3 927 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TRPV2Q9Y5S1 764 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SLC12A8A0AV02 714 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 BCKDKO14874 412 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 VPS26AO75436 327 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 E2F6O75461 281 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 DIRAS1O95057 198 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PARNO95453 639 aaKnown RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 OXSR1O95747 527 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-212ENST00000552491 MT-ND2P03891 347 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 GSNP06396 782 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 PGRP06401 933 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ALOX5P09917 674 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CCDC159P0C7I6 412 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 ITGB6P18564 788 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 CR2P20023 1033 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 SLC6A4P31645 630 aa5.3□□□□□ -1.56
LIMA1-212ENST00000552491 RYKP34925 604 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms