RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SVILO95425 2214 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 MTORP42345 2549 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 CCDC88CQ9P219 2028 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 ZFHX3Q15911 3703 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 SOCS6O14544 535 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 PCDH17O14917 1159 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 ZSCAN9O15535 394 aaPredicted RBP12.28□□□□□ -0.44
SCAF11-208ENST00000546534 PRAMEF1O95521 474 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 CD68P34810 354 aaPredicted RBP12.28□□□□□ -0.44
SCAF11-208ENST00000546534 TDGF1P3P51864 188 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 PRKD1Q15139 912 aaPredicted RBP12.28□□□□□ -0.44
SCAF11-208ENST00000546534 TESK1Q15569 626 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 ZNF630Q2M218 657 aaPredicted RBP12.28□□□□□ -0.44
SCAF11-208ENST00000546534 IRAK1BP1Q5VVH5 260 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 SLC9A4Q6AI14 798 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 RBM43Q6ZSC3 357 aaKnown RBP12.28□□□□□ -0.44
SCAF11-208ENST00000546534 MRGPRGQ86SM5 289 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 ZNF295-AS1Q8N0V1 137 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 HM13Q8TCT9 377 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 NACC2Q96BF6 587 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 CCDC120Q96HB5 630 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 TEKT5Q96M29 485 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 OLFM3Q96PB7 478 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 LHPPQ9H008 270 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 OR52A5Q9H2C5 316 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 TXLNGQ9NUQ3 528 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 ANO10Q9NW15 660 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 HACD3Q9P035 362 aa12.28□□□□□ -0.44
SCAF11-208ENST00000546534 A0A087X0T9 212 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 LRRD1A4D1F6 860 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 APOL1O14791 398 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 PPP1R12AO14974 1030 aaPredicted RBP12.27□□□□□ -0.45
SCAF11-208ENST00000546534 STX7O15400 261 aaKnown RBP12.27□□□□□ -0.45
SCAF11-208ENST00000546534 FAM228BP0C875 321 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 UGT2B7P16662 529 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 PTPN3P26045 913 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 TMPRSS15P98073 1019 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 PRKG2Q13237 762 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 RPUSD3Q6P087 351 aaKnown RBP12.27□□□□□ -0.45
SCAF11-208ENST00000546534 SARM1Q6SZW1 724 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 SASS6Q6UVJ0 657 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 KIRREL2Q6UWL6 708 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 LINC00696Q6ZRV3 163 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 HOOK3Q86VS8 718 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 ZNF808Q8N4W9 903 aaPredicted RBP12.27□□□□□ -0.45
SCAF11-208ENST00000546534 OR1N1Q8NGS0 311 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.27□□□□□ -0.45
SCAF11-208ENST00000546534 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.27□□□□□ -0.45
SCAF11-208ENST00000546534 MRGPRX2Q96LB1 330 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 TRIM56Q9BRZ2 755 aaKnown RBP12.27□□□□□ -0.45
SCAF11-208ENST00000546534 NDC1Q9BTX1 674 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 HGH1Q9BTY7 390 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 MVB12BQ9H7P6 319 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 SUCOQ9UBS9 1254 aaKnown RBP12.27□□□□□ -0.45
SCAF11-208ENST00000546534 CDC23Q9UJX2 597 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 HS3ST3B1Q9Y662 390 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 PCM1Q15154 2024 aa12.27□□□□□ -0.45
SCAF11-208ENST00000546534 MED13LQ71F56 2210 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 PKDREJQ9NTG1 2253 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 CNTRLQ7Z7A1 2325 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 TRGV8A0A0C4DH27 118 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 C3orf70A6NLC5 250 aaPredicted RBP12.26□□□□□ -0.45
SCAF11-208ENST00000546534 ZNF487B1APH4 448 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 IFRD1O00458 451 aaPredicted RBP12.26□□□□□ -0.45
SCAF11-208ENST00000546534 CCL21O00585 134 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 KLHL18O94889 574 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 EPOP01588 193 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 NFKB1P19838 968 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 PDHA2P29803 388 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 PRLHRP49683 370 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 Q0VFX4 171 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 BOP1Q14137 746 aaKnown RBP12.26□□□□□ -0.45
SCAF11-208ENST00000546534 NFKBIBQ15653 356 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 SLC1A5Q15758 541 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 VWA2Q5GFL6 755 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 ALKBH5Q6P6C2 394 aaKnown RBP12.26□□□□□ -0.45
SCAF11-208ENST00000546534 TLDC1Q6P9B6 456 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 ISLR2Q6UXK2 745 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 NR4A3Q92570 626 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 OXNAD1Q96HP4 312 aaPredicted RBP12.26□□□□□ -0.45
SCAF11-208ENST00000546534 THOC3Q96J01 351 aaKnown RBP12.26□□□□□ -0.45
SCAF11-208ENST00000546534 MAGEB10Q96LZ2 347 aaPredicted RBP12.26□□□□□ -0.45
SCAF11-208ENST00000546534 OR2A14Q96R47 310 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 TAAR6Q96RI8 345 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 CHRNA10Q9GZZ6 450 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 ASB8Q9H765 288 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 COG4Q9H9E3 785 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 IRAK4Q9NWZ3 460 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 CTTNBP2NLQ9P2B4 639 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 ICKQ9UPZ9 632 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 ARL5AQ9Y689 179 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 MYO7BQ6PIF6 2116 aa12.26□□□□□ -0.45
SCAF11-208ENST00000546534 DOCK10Q96BY6 2186 aa12.25□□□□□ -0.45
SCAF11-208ENST00000546534 C17orf113A0A1B0GUU1 675 aa12.25□□□□□ -0.45
SCAF11-208ENST00000546534 SRP72O76094 671 aaKnown RBP12.25□□□□□ -0.45
SCAF11-208ENST00000546534 ITGAXP20702 1163 aa12.25□□□□□ -0.45
SCAF11-208ENST00000546534 ALAS2P22557 587 aa12.25□□□□□ -0.45
SCAF11-208ENST00000546534 TNNT3P45378 269 aaPredicted RBP12.25□□□□□ -0.45
SCAF11-208ENST00000546534 CD151P48509 253 aa12.25□□□□□ -0.45
SCAF11-208ENST00000546534 KRTAP10-9P60411 292 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms