RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 MCM3APO60318 1980 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 SNAP29O95721 258 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 STATHP02808 62 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 SLC10A3P09131 477 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 SLC6A4P31645 630 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 PSMD8P48556 350 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 PLEKHG6Q3KR16 790 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 CARD16Q5EG05 197 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 ARMC6Q6NXE6 501 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 TRIM40Q6P9F5 258 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 EIF3MQ7L2H7 374 aaKnown RBP15.35■□□□□ 0.05
CUX1-211ENST00000546411 OR5AK3PQ8NH89 298 aa15.35■□□□□ 0.05
CUX1-211ENST00000546411 FOXD2O60548 495 aaPredicted RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 TPST2O60704 377 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 IL7RP16871 459 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 FDXRP22570 491 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 FMO3P31513 532 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 IST1P53990 364 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 LY6G5CQ5SRR4 150 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 GPRC6AQ5T6X5 926 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 DPY19L3Q6ZPD9 716 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 GET4Q7L5D6 327 aaPredicted RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 C17orf64Q86WR6 236 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 DCAF4L2Q8NA75 395 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 GTPBP3Q969Y2 492 aaKnown RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 FUBP1Q96AE4 644 aaKnown RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 NUAK2Q9H093 628 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 SLC32A1Q9H598 525 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 DHRS7Q9Y394 339 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 NME4O00746 187 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 MAT2AP31153 395 aaKnown RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 BUD31P41223 144 aaPredicted RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 CTSKP43235 329 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 SSR2P43308 183 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 HTRA3P83110 453 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 C1DQ13901 141 aaKnown RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 ABRAXAS2Q15018 415 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 CARTPTQ16568 116 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 USP39Q53GS9 565 aaKnown RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 DGKKQ5KSL6 1271 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 CCNYL2Q5T2Q4 361 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 GALNT18Q6P9A2 607 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 FERD3LQ96RJ6 166 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 NODALQ96S42 347 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 RTP3Q9BQQ7 232 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 PLGRKTQ9HBL7 147 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 PTTG2Q9NZH5 202 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 IFT80Q9P2H3 777 aaPredicted RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 DPP7Q9UHL4 492 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 PDE10AQ9Y233 779 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 CLIC1O00299 241 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 QSOX1O00391 747 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 MUSKO15146 869 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 ACADMP11310 421 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 MAPK9P45984 424 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 PLA2G16P53816 162 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 CDH12P55289 794 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 EEFSECP57772 596 aaKnown RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 OR4D2P58180 307 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 MYLK3Q32MK0 819 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 OTUD1Q5VV17 481 aaPredicted RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 FRG2Q64ET8 278 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 RGL4Q8IZJ4 473 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 C1orf52Q8N6N3 182 aaKnown RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 C10orf53Q8N6V4 93 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 ZNF557Q8N988 423 aaPredicted RBP15.34■□□□□ 0.05
CUX1-211ENST00000546411 CSGALNACT1Q8TDX6 532 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 FRG2BQ96QU4 278 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 TSC22D4Q9Y3Q8 395 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 LYVE1Q9Y5Y7 322 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 PHIPQ8WWQ0 1821 aa15.34■□□□□ 0.05
CUX1-211ENST00000546411 SMAD6O43541 496 aaKnown RBP15.33■□□□□ 0.05
CUX1-211ENST00000546411 SCELO95171 688 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 DGKGP49619 791 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 DAG1Q14118 895 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 GPAT3Q53EU6 434 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 GDPD4Q6W3E5 623 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 TPRG1Q6ZUI0 275 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 GALNT10Q86SR1 603 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 OOSP2Q86WS3 158 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 PHYKPLQ8IUZ5 450 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 NXPE1Q8N323 547 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 TIFAQ96CG3 184 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 SLC29A1Q99808 456 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 TREX1Q9NSU2 369 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 ZIM2Q9NZV7 527 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 UBR3Q6ZT12 1888 aa15.33■□□□□ 0.05
CUX1-211ENST00000546411 TULP3O75386 442 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 RPN2P04844 631 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 PRPS2P11908 318 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 ARCN1P48444 511 aaKnown RBP15.33■□□□□ 0.04
CUX1-211ENST00000546411 HSPB3Q12988 150 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 NCF4Q15080 339 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 SLCO6A1Q86UG4 719 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 MYLIPQ8WY64 445 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 NOL6Q9H6R4 1146 aaKnown RBP15.33■□□□□ 0.04
CUX1-211ENST00000546411 SELENONQ9NZV5 590 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 ENTPD4Q9Y227 616 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 NUMBLQ9Y6R0 609 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 C1QTNF3-AMACRE9PGA6 284 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms