RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 CDK2AP1O14519 115 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 SMAD7O15105 426 aaKnown RBP9.06□□□□□ -0.96
YBX3-211ENST00000541351 F10P00742 488 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 ERCC2P18074 760 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 MMP8P22894 467 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 SERPINB6P35237 376 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 NOMO3P69849 1222 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 FANCCQ00597 558 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 ZNF33BQ06732 778 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 CBLBQ13191 982 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 SLC25A35Q3KQZ1 300 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 TAF3Q5VWG9 929 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 ALS2CLQ60I27 953 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 METRNLQ641Q3 311 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 SARM1Q6SZW1 724 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 ARHGAP36Q6ZRI8 547 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 TTLL10Q6ZVT0 673 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 C11orf96Q7Z7L8 435 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 CD163Q86VB7 1156 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 FAM20CQ8IXL6 584 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 PSMF1Q92530 271 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 MIEF2Q96C03 454 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 PWWP2AQ96N64 755 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 SRPK1Q96SB4 655 aaKnown RBP9.06□□□□□ -0.96
YBX3-211ENST00000541351 TRIM51Q9BSJ1 452 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 CCM2Q9BSQ5 444 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 CRACR2AQ9BSW2 395 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 TDRD1Q9BXT4 1180 aaKnown RBP9.06□□□□□ -0.96
YBX3-211ENST00000541351 AMBRA1Q9C0C7 1298 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 SPRTNQ9H040 489 aaPredicted RBP9.06□□□□□ -0.96
YBX3-211ENST00000541351 TSPAN10Q9H1Z9 355 aaPredicted RBP9.06□□□□□ -0.96
YBX3-211ENST00000541351 DHX35Q9H5Z1 703 aaKnown RBP9.06□□□□□ -0.96
YBX3-211ENST00000541351 ZWILCHQ9H900 591 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 NT5MQ9NPB1 228 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 AMACRQ9UHK6 382 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 HOOK1Q9UJC3 728 aaKnown RBP9.06□□□□□ -0.96
YBX3-211ENST00000541351 RCOR1Q9UKL0 485 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 CHKBQ9Y259 395 aa9.06□□□□□ -0.96
YBX3-211ENST00000541351 CFAP20Q9Y6A4 193 aaKnown RBP9.06□□□□□ -0.96
YBX3-211ENST00000541351 DSCR3O14972 297 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 PRPSAP2O60256 369 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 MTX2O75431 263 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 CALB1P05937 261 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 ARL4AP40617 200 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 HCAR3P49019 387 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 ZNF143P52747 638 aaPredicted RBP9.05□□□□□ -0.96
YBX3-211ENST00000541351 GSCP56915 257 aaPredicted RBP9.05□□□□□ -0.96
YBX3-211ENST00000541351 LONRF2Q1L5Z9 754 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 FAM214AQ32MH5 1076 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 FLYWCH1Q4VC44 716 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 LDLRAP1Q5SW96 308 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 ZDHHC20Q5W0Z9 365 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 ZNF449Q6P9G9 518 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 SPESP1Q6UW49 350 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 PGBD5Q8N414 524 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 TTC29Q8NA56 475 aaPredicted RBP9.05□□□□□ -0.96
YBX3-211ENST00000541351 JOSD2Q8TAC2 188 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 SEC16BQ96JE7 1060 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 ZNF354BQ96LW1 612 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 FRMD6Q96NE9 622 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 INSM2Q96T92 566 aaPredicted RBP9.05□□□□□ -0.96
YBX3-211ENST00000541351 UTP23Q9BRU9 249 aaKnown RBP9.05□□□□□ -0.96
YBX3-211ENST00000541351 WWP1Q9H0M0 922 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.05□□□□□ -0.96
YBX3-211ENST00000541351 ZNF282Q9UDV7 671 aaPredicted RBP9.05□□□□□ -0.96
YBX3-211ENST00000541351 GNPTGQ9UJJ9 305 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 C3orf18Q9UK00 162 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 DNAJC12Q9UKB3 198 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 CCDC88CQ9P219 2028 aa9.05□□□□□ -0.96
YBX3-211ENST00000541351 RCCD1A6NED2 376 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 ANKRD66B4E2M5 251 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 H3BMH7 237 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 IFRD1O00458 451 aaPredicted RBP9.04□□□□□ -0.96
YBX3-211ENST00000541351 KDM1AO60341 852 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 PRMT3O60678 531 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 SMPD2O60906 423 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 SIX3O95343 332 aaPredicted RBP9.04□□□□□ -0.96
YBX3-211ENST00000541351 SLC9A1P19634 815 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 NSFP46459 744 aaKnown RBP9.04□□□□□ -0.96
YBX3-211ENST00000541351 ZFP36L2P47974 494 aaKnown RBP9.04□□□□□ -0.96
YBX3-211ENST00000541351 NDUFA8P51970 172 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 FOXL2P58012 376 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 NFE2L1Q14494 772 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 GRM7Q14831 915 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 DEFB110Q30KQ9 67 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 TCTE1Q5JU00 501 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 FKBP15Q5T1M5 1219 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 ERMARDQ5T6L9 678 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 TIGD7Q6NT04 549 aaPredicted RBP9.04□□□□□ -0.96
YBX3-211ENST00000541351 WDR59Q6PJI9 974 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 PAOXQ6QHF9 649 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 TMCO3Q6UWJ1 677 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 AMIGO1Q86WK6 493 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 PSTKQ8IV42 348 aaKnown RBP9.04□□□□□ -0.96
YBX3-211ENST00000541351 SIAH3Q8IW03 269 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 POGLUT1Q8NBL1 392 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 OR10Q1Q8NGQ4 319 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 SMARCE1Q969G3 411 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 PIGTQ969N2 578 aa9.04□□□□□ -0.96
YBX3-211ENST00000541351 Q96MF0 132 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms