RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 FAM20CQ8IXL6 584 aa8.8□□□□□ -1
USP28-205ENST00000537706 ATPAF2Q8N5M1 289 aa8.8□□□□□ -1
USP28-205ENST00000537706 C19orf47Q8N9M1 422 aaKnown RBP8.8□□□□□ -1
USP28-205ENST00000537706 ACVR1CQ8NER5 493 aa8.8□□□□□ -1
USP28-205ENST00000537706 FAM57AQ8TBR7 257 aa8.8□□□□□ -1
USP28-205ENST00000537706 HDAC10Q969S8 669 aa8.8□□□□□ -1
USP28-205ENST00000537706 LRRC46Q96FV0 321 aa8.8□□□□□ -1
USP28-205ENST00000537706 GSDMAQ96QA5 445 aa8.8□□□□□ -1
USP28-205ENST00000537706 SPSB2Q99619 263 aa8.8□□□□□ -1
USP28-205ENST00000537706 TUBGCP2Q9BSJ2 902 aa8.8□□□□□ -1
USP28-205ENST00000537706 TP63Q9H3D4 680 aaPredicted RBP8.8□□□□□ -1
USP28-205ENST00000537706 DHX35Q9H5Z1 703 aaKnown RBP8.8□□□□□ -1
USP28-205ENST00000537706 NT5MQ9NPB1 228 aa8.8□□□□□ -1
USP28-205ENST00000537706 RIC8BQ9NVN3 520 aa8.8□□□□□ -1
USP28-205ENST00000537706 ACSL5Q9ULC5 683 aa8.8□□□□□ -1
USP28-205ENST00000537706 AP4E1Q9UPM8 1137 aa8.8□□□□□ -1
USP28-205ENST00000537706 CHKBQ9Y259 395 aa8.8□□□□□ -1
USP28-205ENST00000537706 PCM1Q15154 2024 aa8.8□□□□□ -1
USP28-205ENST00000537706 KLHL33A6NCF5 533 aa8.79□□□□□ -1
USP28-205ENST00000537706 A6NNC1 897 aa8.79□□□□□ -1
USP28-205ENST00000537706 ZNF500O60304 480 aaPredicted RBP8.79□□□□□ -1
USP28-205ENST00000537706 SLC9A1P19634 815 aa8.79□□□□□ -1
USP28-205ENST00000537706 PTGS2P35354 604 aa8.79□□□□□ -1
USP28-205ENST00000537706 STX17P56962 302 aa8.79□□□□□ -1
USP28-205ENST00000537706 NOMO3P69849 1222 aa8.79□□□□□ -1
USP28-205ENST00000537706 ZNF33BQ06732 778 aa8.79□□□□□ -1
USP28-205ENST00000537706 AP1B1Q10567 949 aa8.79□□□□□ -1
USP28-205ENST00000537706 IQCB1Q15051 598 aa8.79□□□□□ -1
USP28-205ENST00000537706 CATSPEREQ5SY80 951 aa8.79□□□□□ -1
USP28-205ENST00000537706 TXNRD3NBQ6F5E7 133 aa8.79□□□□□ -1
USP28-205ENST00000537706 NLRP9Q7RTR0 991 aa8.79□□□□□ -1
USP28-205ENST00000537706 CD163Q86VB7 1156 aa8.79□□□□□ -1
USP28-205ENST00000537706 ELOA2Q8IYF1 753 aaPredicted RBP8.79□□□□□ -1
USP28-205ENST00000537706 FAM71AQ8IYT1 594 aa8.79□□□□□ -1
USP28-205ENST00000537706 HORMAD2Q8N7B1 307 aa8.79□□□□□ -1
USP28-205ENST00000537706 SMIM14Q96QK8 99 aa8.79□□□□□ -1
USP28-205ENST00000537706 INSM2Q96T92 566 aaPredicted RBP8.79□□□□□ -1
USP28-205ENST00000537706 BPIFA3Q9BQP9 254 aa8.79□□□□□ -1
USP28-205ENST00000537706 MENTQ9BUN1 341 aa8.79□□□□□ -1
USP28-205ENST00000537706 NAT10Q9H0A0 1025 aaKnown RBP8.79□□□□□ -1
USP28-205ENST00000537706 WWP1Q9H0M0 922 aa8.79□□□□□ -1
USP28-205ENST00000537706 ZFYVE1Q9HBF4 777 aa8.79□□□□□ -1
USP28-205ENST00000537706 PLCL2Q9UPR0 1127 aa8.79□□□□□ -1
USP28-205ENST00000537706 TACC2O95359 2948 aa8.79□□□□□ -1
USP28-205ENST00000537706 GOLGA6L6A8MZA4 724 aa8.78□□□□□ -1
USP28-205ENST00000537706 CES2O00748 559 aa8.78□□□□□ -1
USP28-205ENST00000537706 CCP110O43303 1012 aa8.78□□□□□ -1
USP28-205ENST00000537706 TPM3P06753 285 aa8.78□□□□□ -1
USP28-205ENST00000537706 PVRP15151 417 aa8.78□□□□□ -1
USP28-205ENST00000537706 PBLDP30039 288 aaPredicted RBP8.78□□□□□ -1
USP28-205ENST00000537706 RUNX1T1Q06455 604 aa8.78□□□□□ -1
USP28-205ENST00000537706 DEFB110Q30KQ9 67 aa8.78□□□□□ -1
USP28-205ENST00000537706 Q5PR19 223 aa8.78□□□□□ -1
USP28-205ENST00000537706 YOD1Q5VVQ6 348 aaPredicted RBP8.78□□□□□ -1
USP28-205ENST00000537706 SARM1Q6SZW1 724 aa8.78□□□□□ -1
USP28-205ENST00000537706 DCHS2Q6V1P9 2916 aa8.78□□□□□ -1
USP28-205ENST00000537706 CAPN12Q6ZSI9 719 aa8.78□□□□□ -1
USP28-205ENST00000537706 SHISA6Q6ZSJ9 500 aa8.78□□□□□ -1
USP28-205ENST00000537706 TTLL10Q6ZVT0 673 aa8.78□□□□□ -1
USP28-205ENST00000537706 FAM222BQ8WU58 562 aa8.78□□□□□ -1
USP28-205ENST00000537706 PSMF1Q92530 271 aa8.78□□□□□ -1
USP28-205ENST00000537706 C11orf70Q9BRQ4 267 aa8.78□□□□□ -1
USP28-205ENST00000537706 ADGRE3Q9BY15 652 aa8.78□□□□□ -1
USP28-205ENST00000537706 SLC6A16Q9GZN6 736 aa8.78□□□□□ -1
USP28-205ENST00000537706 PCDH9Q9HC56 1237 aa8.78□□□□□ -1
USP28-205ENST00000537706 ACTR10Q9NZ32 417 aa8.78□□□□□ -1
USP28-205ENST00000537706 NFKBIL1Q9UBC1 381 aaPredicted RBP8.78□□□□□ -1
USP28-205ENST00000537706 ALG6Q9Y672 507 aa8.78□□□□□ -1
USP28-205ENST00000537706 ASPDHA6ND91 283 aa8.78□□□□□ -1
USP28-205ENST00000537706 GOLGA6L19H0YKK7 550 aa8.78□□□□□ -1
USP28-205ENST00000537706 UGT1A1P22309 533 aa8.78□□□□□ -1
USP28-205ENST00000537706 CDC25BP30305 580 aa8.78□□□□□ -1
USP28-205ENST00000537706 ZNF143P52747 638 aaPredicted RBP8.78□□□□□ -1
USP28-205ENST00000537706 FANCCQ00597 558 aa8.78□□□□□ -1
USP28-205ENST00000537706 NFE2L1Q14494 772 aa8.78□□□□□ -1
USP28-205ENST00000537706 WDR59Q6PJI9 974 aa8.78□□□□□ -1
USP28-205ENST00000537706 C11orf96Q7Z7L8 435 aa8.78□□□□□ -1
USP28-205ENST00000537706 TTC29Q8NA56 475 aaPredicted RBP8.78□□□□□ -1
USP28-205ENST00000537706 MIEF2Q96C03 454 aa8.78□□□□□ -1
USP28-205ENST00000537706 VPS35Q96QK1 796 aa8.78□□□□□ -1
USP28-205ENST00000537706 CCM2Q9BSQ5 444 aa8.78□□□□□ -1
USP28-205ENST00000537706 TDRD1Q9BXT4 1180 aaKnown RBP8.78□□□□□ -1
USP28-205ENST00000537706 CHRNA10Q9GZZ6 450 aa8.78□□□□□ -1
USP28-205ENST00000537706 KLHL1Q9NR64 748 aa8.78□□□□□ -1
USP28-205ENST00000537706 GNPTGQ9UJJ9 305 aa8.78□□□□□ -1
USP28-205ENST00000537706 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.78□□□□□ -1
USP28-205ENST00000537706 BTN3A1O00481 513 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 DDX3XO00571 662 aaKnown RBP eCLIP8.77□□□□□ -1.011e-9■■■■□ 20
USP28-205ENST00000537706 DSCR3O14972 297 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 PRPSAP2O60256 369 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 WISP2O76076 250 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 SUN1O94901 812 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 ONECUT2O95948 504 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 ZNF24P17028 368 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 MMP8P22894 467 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 ZNF75DP51815 510 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 SPESP1Q6UW49 350 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 ZNF677Q86XU0 584 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 CREBRFQ8IUR6 639 aa8.77□□□□□ -1.01
USP28-205ENST00000537706 CCDC71Q8IV32 467 aaPredicted RBP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms