RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ELP5Q8TE02 316 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 IP6K1Q92551 441 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 ELMO1Q92556 727 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 ATP2A3Q93084 1043 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 GJA10Q969M2 543 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 MAGOHBQ96A72 148 aaKnown RBP5.41□□□□□ -1.54
CD44-236ENST00000533222 OTUB2Q96DC9 234 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 SGTBQ96EQ0 304 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 MCRS1Q96EZ8 462 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 HMCESQ96FZ2 354 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 TMEM41AQ96HV5 264 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 SERAC1Q96JX3 654 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 SGCZQ96LD1 299 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 TEPSINQ96N21 525 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 TRNT1Q96Q11 434 aaKnown RBP5.41□□□□□ -1.54
CD44-236ENST00000533222 OR5M11Q96RB7 305 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 TGS1Q96RS0 853 aaKnown RBP5.41□□□□□ -1.54
CD44-236ENST00000533222 SLC25A23Q9BV35 468 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 TMED9Q9BVK6 235 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 SSBP3Q9BWW4 388 aaPredicted RBP5.41□□□□□ -1.54
CD44-236ENST00000533222 PLA2G12BQ9BX93 195 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 DERL2Q9GZP9 239 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 METTL9Q9H1A3 318 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 CATSPERBQ9H7T0 1116 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 FBXO8Q9NRD0 319 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 SMOXQ9NWM0 555 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 FAM120CQ9NX05 1096 aaKnown RBP5.41□□□□□ -1.54
CD44-236ENST00000533222 KLHL9Q9P2J3 617 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 ABCD2Q9UBJ2 740 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 CPNE7Q9UBL6 633 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 CNOT8Q9UFF9 292 aaKnown RBP5.41□□□□□ -1.54
CD44-236ENST00000533222 AFF4Q9UHB7 1163 aaKnown RBP5.41□□□□□ -1.54
CD44-236ENST00000533222 BCAP29Q9UHQ4 241 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 DAPK2Q9UIK4 370 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 ZBTB21Q9ULJ3 1066 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 SORCS3Q9UPU3 1222 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 HPSEQ9Y251 543 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 PLLPQ9Y342 182 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 PPIL1Q9Y3C6 166 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 CYP46A1Q9Y6A2 500 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 V9GYQ6 96 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 ARHGEF40Q8TER5 1519 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 RFX7Q2KHR2 1363 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 NAV1Q8NEY1 1877 aa5.41□□□□□ -1.54
CD44-236ENST00000533222 MYH1P12882 1939 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 MAGI3Q5TCQ9 1506 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 SCN4AP35499 1836 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 A0A087WXM4 84 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 A0A0B4J293 547 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 LOC100506127A0A0U1RQW1 187 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 ARHGAP42A6NI28 874 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 NCF1BA6NI72 391 aaPredicted RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 OR6C70A6NIJ9 312 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 NCF1CA8MVU1 366 aaPredicted RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 GPR171O14626 319 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 APAF1O14727 1248 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 TNPO2O14787 897 aaKnown RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 TO15178 435 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 ARHGEF9O43307 516 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 CHMP2AO43633 222 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 PRPSAP2O60256 369 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 SRGAP2O75044 1071 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 CIB2O75838 187 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 CLPXO76031 633 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 STC2O76061 302 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 NDUFA10O95299 355 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 CELF2O95319 508 aaKnown RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 TSPAN12O95859 305 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 GOT2P00505 430 aaKnown RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 IGHV2-70P01814 119 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 AMHP03971 560 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 PRKCBP05771 671 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 STSP08842 583 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 SBK2P0C263 348 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 LINC00614P0C842 121 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 T-ENOLP0DO92 83 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 TXNP10599 105 aaKnown RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 TCF4P15884 667 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 SPI1P17947 270 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 CR2P20023 1033 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 PTBP1P26599 531 aaKnown RBP eCLIP5.4□□□□□ -1.54
CD44-236ENST00000533222 RPA1P27694 616 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 PIK3R1P27986 724 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 YWHABP31946 246 aaKnown RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 NUP62P37198 522 aaPredicted RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 CEACAM6P40199 344 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 MCAMP43121 646 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 SERPINB9P50453 376 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 TXNL4AP83876 142 aaKnown RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 BNIP2Q12982 314 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 PIN1Q13526 163 aaPredicted RBP5.4□□□□□ -1.54
CD44-236ENST00000533222 FGL2Q14314 439 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 ANGPT1Q15389 498 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 TAB1Q15750 504 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 MEA1Q16626 185 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 FAM214AQ32MH5 1076 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 UGT3A2Q3SY77 523 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 PRR16Q569H4 304 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 ZNF484Q5JVG2 852 aa5.4□□□□□ -1.54
CD44-236ENST00000533222 ZNF618Q5T7W0 954 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms