RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CLN6Q9NWW5 311 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 RPS6KB2Q9UBS0 482 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 PSME2Q9UL46 239 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 BTBD3Q9Y2F9 522 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SMCHD1A6NHR9 2005 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 A0A1W2PP18 115 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 LCHNA4D1U4 455 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 TNFRSF11BO00300 401 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 PPP6CO00743 305 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SNNO75324 88 aaPredicted RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 MS4A2Q01362 244 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 GHRHRQ02643 423 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 PTCHD3Q3KNS1 767 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 METTL3Q86U44 580 aaKnown RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SMG7Q92540 1137 aaKnown RBP11.48□□□□□ -0.57
SYNPO-204ENST00000519664 C8orf48Q96LL4 319 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 OR2AG1Q9H205 316 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SMURF2Q9HAU4 748 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 SEC14L3Q9UDX4 400 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 N6AMT1Q9Y5N5 214 aa11.48□□□□□ -0.57
SYNPO-204ENST00000519664 A0A1B0GVG6 124 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 NUDT14O95848 222 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 FABP3P05413 133 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 RAP2AP10114 183 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 C1QTNF8P60827 252 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 PTSQ03393 145 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 HERC3Q15034 1050 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 TLR1Q15399 786 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 HKDC1Q2TB90 917 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 TBC1D25Q3MII6 688 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 UBXN11Q5T124 520 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 PSAPL1Q6NUJ1 521 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 TMEM53Q6P2H8 277 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 MBOAT1Q6ZNC8 495 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 SMYD1Q8NB12 490 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 C11orf65Q8NCR3 313 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 OR52B6Q8NGF0 335 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 PLD4Q96BZ4 506 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 QRFPRQ96P65 431 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 FNDC11Q9BVV2 318 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 NUSAP1Q9BXS6 441 aaKnown RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 INTS7Q9NVH2 962 aaKnown RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 TMEM248Q9NWD8 314 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 STMN3Q9NZ72 180 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 AQP12BA6NM10 295 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 G3V2L1 256 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 LAG3P18627 525 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 TALDO1P37837 337 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 C6orf136Q5SQH8 315 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 TRIQKQ629K1 86 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 ANKRD26P1Q6NSI1 321 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 MAMDC4Q6UXC1 1216 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 CHSY3Q70JA7 882 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 ERI1Q8IV48 349 aaKnown RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 SPNS2Q8IVW8 549 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 AQP12AQ8IXF9 295 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 TTC29Q8NA56 475 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 UXS1Q8NBZ7 420 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 OR8D1Q8WZ84 308 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 RELTQ969Z4 430 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 BIRC7Q96CA5 298 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 RTP4Q96DX8 246 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 HSPBAP1Q96EW2 488 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 HEPHQ9BQS7 1158 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 ZNF232Q9UNY5 417 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 ZNF487B1APH4 448 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 C1QTNF3-AMACRE9PGA6 284 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 J3QRK9 145 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 SOCS7O14512 581 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 ZNF865P0CJ78 1059 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 AZGP1P25311 298 aaKnown RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 VARSP26640 1264 aaKnown RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 GSTM5P46439 218 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 STK19P49842 368 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 CDKN1CP49918 316 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 CSNK2BP67870 215 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 USP39Q53GS9 565 aaKnown RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 UNC50Q53HI1 259 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 ARSIQ5FYB1 569 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 LDLRAD1Q5T700 205 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 ATG14Q6ZNE5 492 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 Q6ZVL8 140 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 CYP4Z2PQ8N1L4 340 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 PIH1D2Q8WWB5 315 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 MYDGFQ969H8 173 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 FBXL8Q96CD0 374 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 RIOK2Q9BVS4 552 aaKnown RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 FLRT1Q9NZU1 646 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 IFT80Q9P2H3 777 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 PRKAB1Q9Y478 270 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 GSAPA4D1B5 854 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 BHMG1C9JSJ3 638 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-204ENST00000519664 COCHO43405 550 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 RGS10O43665 173 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 PGRP06401 933 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 IL7RP16871 459 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 GNAZP19086 355 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 PSMD8P48556 350 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 SH3BP2P78314 561 aa11.47□□□□□ -0.57
SYNPO-204ENST00000519664 MXD1Q05195 221 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms