RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 IZUMO3Q5VZ72 239 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 PTRHD1Q6GMV3 140 aaKnown RBP13.23□□□□□ -0.29
TCOF1-215ENST00000515516 TTC23LQ6PF05 361 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 TMEM135Q86UB9 458 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 LRRC8AQ8IWT6 810 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 OTUD6BQ8N6M0 293 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 GLIS1Q8NBF1 620 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 OR1L3Q8NH93 324 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 TCTN2Q96GX1 697 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 ZNF778Q96MU6 729 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 CARD6Q9BX69 1037 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 CHST8Q9H2A9 424 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 AKIRIN1Q9H9L7 192 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-215ENST00000515516 IRAK4Q9NWZ3 460 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 SNX7Q9UNH6 387 aa13.23□□□□□ -0.29
TCOF1-215ENST00000515516 BHMG1C9JSJ3 638 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-215ENST00000515516 PRMT5O14744 637 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-215ENST00000515516 PFDN6O15212 129 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 CD3EAPO15446 510 aaKnown RBP13.22□□□□□ -0.29
TCOF1-215ENST00000515516 NDUFS3O75489 264 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 RAB40ALP0C0E4 278 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 UGT2B7P16662 529 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 CCR7P32248 378 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 RPS18P62269 152 aaKnown RBP13.22□□□□□ -0.29
TCOF1-215ENST00000515516 SARNPP82979 210 aaKnown RBP13.22□□□□□ -0.29
TCOF1-215ENST00000515516 CDK16Q00536 496 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 TLE1Q04724 770 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 ABRQ12979 859 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 KIR2DS3Q14952 304 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 SIX1Q15475 284 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-215ENST00000515516 PLEKHS1Q5SXH7 462 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 PRAMEF17Q5VTA0 474 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 ZNF534Q76KX8 674 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 SDCCAG8Q86SQ7 713 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-215ENST00000515516 DSELQ8IZU8 1212 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 C19orf47Q8N9M1 422 aaKnown RBP13.22□□□□□ -0.29
TCOF1-215ENST00000515516 TEX19Q8NA77 164 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 CFAP61Q8NHU2 1237 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 PANX3Q96QZ0 392 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 NRTNQ99748 197 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 DPH2Q9BQC3 489 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-215ENST00000515516 GNPTGQ9UJJ9 305 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 AP1M2Q9Y6Q5 423 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 COL6A6A6NMZ7 2263 aa13.22□□□□□ -0.29
TCOF1-215ENST00000515516 A0A0J9YY10 115 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 C9J4A7 227 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 KPNA5O15131 536 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 ZNF749O43361 778 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 OR2B3O76000 313 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 CXCR5P32302 372 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 CASRP41180 1078 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 KCNJ1P48048 391 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 KLRB1Q12918 225 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 MRNIPQ6NTE8 343 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 TCTN3Q6NUS6 607 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 CDHR3Q6ZTQ4 885 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 ASB18Q6ZVZ8 466 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 LDB1Q86U70 411 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-215ENST00000515516 TRIM73Q86UV7 250 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 LRRC6Q86X45 466 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 APLFQ8IW19 511 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-215ENST00000515516 SYTL1Q8IYJ3 562 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 SLC22A15Q8IZD6 547 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 MPP5Q8N3R9 675 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 ENDOVQ8N8Q3 282 aaKnown RBP13.21□□□□□ -0.29
TCOF1-215ENST00000515516 SLC38A9Q8NBW4 561 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 SKA2Q8WVK7 121 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-215ENST00000515516 SLC22A18Q96BI1 424 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 OR2A14Q96R47 310 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 RUFY1Q96T51 708 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 C17orf62Q9BQA9 187 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 AP1M1Q9BXS5 423 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 NLNQ9BYT8 704 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 ACSS2Q9NR19 701 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 PCMTD2Q9NV79 361 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 TLK1Q9UKI8 766 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 PLAGL1Q9UM63 463 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 G3BP2Q9UN86 482 aaKnown RBP13.21□□□□□ -0.29
TCOF1-215ENST00000515516 TP53TG5Q9Y2B4 290 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 PADI2Q9Y2J8 665 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 MRFAP1Q9Y605 127 aa13.21□□□□□ -0.29
TCOF1-215ENST00000515516 HELZ2Q9BYK8 2649 aaKnown RBP13.2□□□□□ -0.3
TCOF1-215ENST00000515516 IQCF5A8MTL0 148 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 MGAT1P26572 445 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 RORAP35398 523 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 RAB28P51157 221 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 TERF1P54274 439 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 CRADDP78560 199 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 SEMA3AQ14563 771 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 SLC5A12Q1EHB4 618 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 LRRC8BQ6P9F7 803 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 UNC5DQ6UXZ4 953 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 ZNF517Q6ZMY9 492 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-215ENST00000515516 DCUN1D3Q8IWE4 304 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 KRT222Q8N1A0 295 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 RAB42Q8N4Z0 105 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 FOPNLQ96NB1 174 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 CHRNA10Q9GZZ6 450 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 SPHK1Q9NYA1 384 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms