RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SCML1Q9UN30 329 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 PCDHGA5Q9Y5G8 931 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 SAR1BQ9Y6B6 198 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 OAS3Q9Y6K5 1087 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 EML5Q05BV3 1969 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 STATHP02808 62 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 SHBGP04278 402 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 APEHP13798 732 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 NR2C2P49116 596 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CKAP4Q07065 602 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 ENPP2Q13822 863 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 PAFAH1B3Q15102 231 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 UAP1Q16222 522 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 FOXB2Q5VYV0 432 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 TMEM220Q6QAJ8 160 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CCNI2Q6ZMN8 369 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 BBS12Q6ZW61 710 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 SATL1Q86VE3 508 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 UNC5BQ8IZJ1 945 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 MFSD2AQ8NA29 543 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 PIH1D2Q8WWB5 315 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CFAP36Q96G28 342 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CRELD1Q96HD1 420 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 KLF6Q99612 283 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 SHCBP1LQ9BZQ2 653 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 KCNK9Q9NPC2 374 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 CHRAC1Q9NRG0 131 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 STMN3Q9NZ72 180 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 PISDQ9UG56 409 aa7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 HELZP42694 1942 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-219ENST00000514096 SH3D21A4FU49 640 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 TRABD2BA6NFA1 517 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 FAM25EA8MYX2 175 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 H3BM21 787 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 AREL1O15033 823 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SERPINB7O75635 380 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PEX11BO96011 259 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 C1SP09871 688 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 CALB2P22676 271 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PREPP48147 710 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 OR1D5P58170 312 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 NXPH1P58417 271 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PCGF5Q86SE9 256 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 CFAP206Q8IYR0 622 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 ANKRD42Q8N9B4 389 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 LRRC57Q8N9N7 239 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 HDAC11Q96DB2 347 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SCRN2Q96FV2 425 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC38A3Q99624 504 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 MGME1Q9BQP7 344 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 LRRC61Q9BV99 259 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 BOCQ9BWV1 1114 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PIF1Q9H611 641 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PKD2L2Q9NZM6 624 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SENP1Q9P0U3 644 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 ANAPC5Q9UJX4 755 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PLAGL1Q9UM63 463 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PHTF1Q9UMS5 762 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 TCRBV7S3A2A0A539 114 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 GAS8O95995 478 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 TNFP01375 233 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 FUCA1P04066 466 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF3P17036 446 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 CTSKP43235 329 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF135P52742 658 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 MAGOHP61326 146 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 ARHGAP8P85298 464 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 TGIF1Q15583 401 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 TIGD2Q4W5G0 525 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 HMBOX1Q6NT76 420 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 C8orf74Q6P047 294 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PNCKQ6P2M8 343 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 AAGABQ6PD74 315 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 CCDC137Q6PK04 289 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF783Q6ZMS7 281 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SPARTQ8N0X7 666 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 DNASE2BQ8WZ79 361 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 HDAC10Q969S8 669 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 EID2BQ96D98 161 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 TOR3AQ9H497 397 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 XKR8Q9H6D3 395 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 WASH6PQ9NQA3 447 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 LRIT1Q9P2V4 623 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 DMTF1Q9Y222 760 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 POLHQ9Y253 713 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SNX24Q9Y343 169 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 DOCK4Q8N1I0 1966 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 FADS2P1A8MWK0 482 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PYCARD-AS1I3L0S3 204 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 TK2O00142 265 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC30A4O14863 429 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PFDN6O15212 129 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 PIAS2O75928 621 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 EML2O95834 649 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 TP53P04637 393 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 ALPPL2P10696 532 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 BPIP17213 487 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 MGAT1P26572 445 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 EPHA8P29322 1005 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 MC4RP32245 332 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms