RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 HLA-DMAP28067 261 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 TGM4P49221 684 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 CRISP3P54108 245 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 DIO3P55073 304 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 EXOSC2Q13868 293 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 CCDC85BQ15834 202 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 MTERF2Q49AM1 385 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 CERCAMQ5T4B2 595 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 TIGD3Q6B0B8 471 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 TRILQ7L0X0 811 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 XYLT1Q86Y38 959 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 PTRH1Q86Y79 214 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 HTR3CQ8WXA8 447 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 TRIM54Q9BYV2 358 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 SMURF1Q9HCE7 757 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 NLKQ9UBE8 527 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 EDARQ9UNE0 448 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ASB14A6NK59 587 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 BTN3A1O00481 513 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 MYL12BO14950 172 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC10A3P09131 477 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 RRASP10301 218 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 MLNP12872 115 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 HGFP14210 728 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 MYL12AP19105 171 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ATP5F1P24539 256 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 IGFBP5P24593 272 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 YWHABP31946 246 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 NOVP48745 357 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ERFEQ4G0M1 354 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ALG1LQ6GMV1 187 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 RASSF6Q6ZTQ3 369 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 FAM183BPQ6ZVS7 135 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 CYP4Z1Q86W10 505 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 CEP97Q8IW35 865 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC37A3Q8NCC5 494 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 CCDC126Q96EE4 140 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 MRPL4Q9BYD3 311 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF518BQ9C0D4 1074 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 TTYH1Q9H313 450 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ASB7Q9H672 318 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 ARHGAP28Q9P2N2 729 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 BTRCQ9Y297 605 aa11.82□□□□□ -0.52
LIMCH1-213ENST00000511496 NRCAMQ92823 1304 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 TARM1B6A8C7 271 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 LGALS8O00214 317 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 ENDOD1O94919 500 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 APOC1P02654 83 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 SRCP12931 536 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 EPHA2P29317 976 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 DCTP40126 519 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 YWHAEP62258 255 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 CTBP1Q13363 440 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 LTB4RQ15722 352 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF79Q15937 498 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 GRIK4Q16099 956 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 DUSP6Q16828 381 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF284Q2VY69 593 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 FAM26DQ5JW98 314 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 OR6B2Q6IFH4 312 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 FAM217AQ8IXS0 508 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 CDYL2Q8N8U2 506 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 HEXDCQ8WVB3 486 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 BSNDQ8WZ55 320 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 ATOH1Q92858 354 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF566Q969W8 418 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 ZBTB45Q96K62 511 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 GABRQQ9UN88 632 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 PKP3Q9Y446 797 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 TULP3O75386 442 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 RAD17O75943 681 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 NFIAQ12857 509 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 CDH18Q13634 790 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 GBX1Q14549 363 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 ZNF169Q14929 603 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 ANGPT1Q15389 498 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 NKG7Q16617 165 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 CYHR1Q6ZMK1 362 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 LRRC8DQ7L1W4 858 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 PID1Q7Z2X4 250 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 SLC51AQ86UW1 340 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 NPAS1Q99742 590 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 OR51B5Q9H339 312 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 MUC13Q9H3R2 512 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 ACTR8Q9H981 624 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 CCNB1IP1Q9NPC3 277 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 PAK6Q9NQU5 681 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 AUP1Q9Y679 476 aa11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 DICER1Q9UPY3 1922 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-213ENST00000511496 NTSR2O95665 410 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 OLFM2O95897 454 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 PGK1P00558 417 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 RAF1P04049 648 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 PSAPP07602 524 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 MYL3P08590 195 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 LINC00032P0C843 101 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 JUNDP17535 347 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 GPD1P21695 349 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 CPN2P22792 545 aa11.8□□□□□ -0.52
LIMCH1-213ENST00000511496 CLCN4P51793 760 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms