RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ACOT9Q9Y305 439 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 UNC13CQ8NB66 2214 aa28.8■■■□□ 2.2
LIMCH1-211ENST00000509638 A0A087X1B8 175 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 NPEPPSL1A6NEC2 478 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 BTN3A1O00481 513 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 C8GP07360 202 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 SIM1P81133 766 aaPredicted RBP28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 SP140Q13342 867 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 UBE2R2Q712K3 238 aaPredicted RBP28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 CCDC91Q7Z6B0 441 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 RASGRP3Q8IV61 690 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 IQCKQ8N0W5 287 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 ROPN1BQ9BZX4 212 aaPredicted RBP28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 ROPN1Q9HAT0 212 aaPredicted RBP28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 GFYI3L273 518 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 CASC3O15234 703 aaKnown RBP28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 RFPL3O75679 317 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 EPHA4P54764 986 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 CCSMST1Q4G0I0 132 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 TTC23LQ6PF05 361 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 TIFABQ6ZNK6 161 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 CENPLQ8N0S6 344 aaPredicted RBP28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 CYP4X1Q8N118 509 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 DLG3Q92796 817 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 NRTNQ99748 197 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 TMEM109Q9BVC6 243 aa28.79■■■□□ 2.2
LIMCH1-211ENST00000509638 RFPL1O75677 317 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 KRT15P19012 456 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 DLG1Q12959 904 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 ILKQ13418 452 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 KRT71Q3SY84 523 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 MAGEC3Q8TD91 643 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 KCTD4Q8WVF5 259 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 LCN9Q8WX39 176 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 SYNDIG1Q9H7V2 258 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 PCMTD2Q9NV79 361 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 DLL3Q9NYJ7 618 aa28.78■■■□□ 2.2
LIMCH1-211ENST00000509638 IGHV1OR21-1A0A087WYE8 117 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 CDC7O00311 574 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 KCNK5O95279 499 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 MPOP05164 745 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 RPLP0P05388 317 aaKnown RBP28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 CD1DP15813 335 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 MAP4P27816 1152 aaKnown RBP28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 SLC26A3P40879 764 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 PPM1FP49593 454 aaPredicted RBP28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 GRB7Q14451 532 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 CASP8Q14790 479 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 AMZ1Q400G9 498 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 RAD51AP1Q96B01 352 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 IGSF5Q9NSI5 407 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 LGALS13Q9UHV8 139 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 ICKQ9UPZ9 632 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 PCDHGA1Q9Y5H4 931 aa28.77■■■□□ 2.2
LIMCH1-211ENST00000509638 DCDC2BA2VCK2 349 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 FOXO6A8MYZ6 492 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 ZW10O43264 779 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 ZBTB14O43829 449 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 UBXN7O94888 489 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 LTA4HP09960 611 aaKnown RBP28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 FTH1P19P0C7X4 201 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 TPBGLP0DKB5 382 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 CYP2A7P20853 494 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 KCNA4P22459 653 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 TSNQ15631 228 aaKnown RBP28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 PHKG1Q16816 387 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 SBSNQ6UWP8 590 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 OR10G6Q8NH81 332 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 ANKRD7Q92527 254 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 SLC12A9Q9BXP2 914 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 TFB2MQ9H5Q4 396 aaKnown RBP28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 XKR8Q9H6D3 395 aa28.76■■■□□ 2.19
LIMCH1-211ENST00000509638 SLC16A5O15375 505 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 B4GAT1O43505 415 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 KDM1AO60341 852 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 HOXD11P31277 338 aaPredicted RBP28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 ATP6V0D1P61421 351 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 GPLD1P80108 840 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 NKAIN2Q5VXU1 208 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 ADAMTSL2Q86TH1 951 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 FBXO15Q8NCQ5 510 aaPredicted RBP28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 RSC1A1Q92681 617 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 ZBTB9Q96C00 473 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 AHCYL2Q96HN2 611 aaKnown RBP28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 MENTQ9BUN1 341 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 ZMYND15Q9H091 742 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 SRMSQ9H3Y6 488 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 PARVBQ9HBI1 364 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 PDE10AQ9Y233 779 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 COL27A1Q8IZC6 1860 aaPredicted RBP28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 MYO1CO00159 1063 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 DUX1O43812 170 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 SYF2O95926 243 aaKnown RBP28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 TOP3BO95985 862 aaKnown RBP28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 MT-ND3P03897 115 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 TYRP1P17643 537 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 CAPZBP47756 277 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 CCL7P80098 99 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 PPP1R3AQ16821 1122 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 CEP85LQ5SZL2 805 aa28.75■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms