RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RPS3AP61247 264 aaKnown RBP2.2□□□□□ -2.06
NUP54-208ENST00000508604 CEBPZQ03701 1054 aaKnown RBP2.2□□□□□ -2.06
NUP54-208ENST00000508604 GLDNQ6ZMI3 551 aaPredicted RBP2.2□□□□□ -2.06
NUP54-208ENST00000508604 CDHR3Q6ZTQ4 885 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 OLIG1Q8TAK6 271 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 RNF128Q8TEB7 428 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 ST8SIA4Q92187 359 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 ZNF486Q96H40 463 aaPredicted RBP2.2□□□□□ -2.06
NUP54-208ENST00000508604 C1orf147Q96MC9 270 aaPredicted RBP2.2□□□□□ -2.06
NUP54-208ENST00000508604 NCAPGQ9BPX3 1015 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 NUP85Q9BW27 656 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 FAM49AQ9H0Q0 323 aaPredicted RBP2.2□□□□□ -2.06
NUP54-208ENST00000508604 PDCL3Q9H2J4 239 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 CPVLQ9H3G5 476 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 GPN1Q9HCN4 374 aaPredicted RBP2.2□□□□□ -2.06
NUP54-208ENST00000508604 B3GAT2Q9NPZ5 323 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 ARHGAP26Q9UNA1 814 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 NAALADL1Q9UQQ1 740 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 PRSS51A0A1B0GVH4 220 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 TRIM49BA6NDI0 452 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 HOXC11O43248 304 aaPredicted RBP2.19□□□□□ -2.06
NUP54-208ENST00000508604 POP4O95707 220 aaKnown RBP2.19□□□□□ -2.06
NUP54-208ENST00000508604 IGHEP01854 428 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 PRB2P02812 416 aaPredicted RBP2.19□□□□□ -2.06
NUP54-208ENST00000508604 SLC6A6P31641 620 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 GUCY2DQ02846 1103 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 NIPAL4Q0D2K0 466 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 PDLIM3Q53GG5 364 aaPredicted RBP2.19□□□□□ -2.06
NUP54-208ENST00000508604 BTN2A1Q7KYR7 527 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 CHMP1BQ7LBR1 199 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 TBC1D16Q8TBP0 767 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 B3GALT6Q96L58 329 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 NECTIN4Q96NY8 510 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 FNBP1Q96RU3 617 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 SLC22A12Q96S37 553 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 LGMNQ99538 433 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 VN1R1Q9GZP7 353 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 MAN2C1Q9NTJ4 1040 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 CTSZQ9UBR2 303 aa2.19□□□□□ -2.06
NUP54-208ENST00000508604 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.19□□□□□ -2.06
NUP54-208ENST00000508604 IGHV4-31P0DP07 118 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 RPL21P46778 160 aaKnown RBP2.18□□□□□ -2.06
NUP54-208ENST00000508604 LMAN1P49257 510 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 PPP2R2BQ00005 443 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 PCGF3Q3KNV8 242 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 GRAMD1BQ3KR37 738 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 SLC9C2Q5TAH2 1124 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 SLC25A47Q6Q0C1 308 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 BAIAP2L2Q6UXY1 529 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 FRRS1Q6ZNA5 592 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 FRMD1Q8N878 549 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 OR13C3Q8NGS6 347 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 TYMSOSQ8TAI1 123 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 METTL6Q8TCB7 284 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 PHLDA1Q8WV24 401 aaPredicted RBP2.18□□□□□ -2.06
NUP54-208ENST00000508604 HTRA1Q92743 480 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 ZKSCAN4Q969J2 545 aaPredicted RBP2.18□□□□□ -2.06
NUP54-208ENST00000508604 SERAC1Q96JX3 654 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 DACH2Q96NX9 599 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 NKX3-1Q99801 234 aaPredicted RBP2.18□□□□□ -2.06
NUP54-208ENST00000508604 TUBB1Q9H4B7 451 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 CACNG4Q9UBN1 327 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 MTMR6Q9Y217 621 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 HCFC1P51610 2035 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 A0A087WUV0 522 aaPredicted RBP2.18□□□□□ -2.06
NUP54-208ENST00000508604 A0A1W2PQF6 199 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 SCAMP1O15126 338 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 SEC24AO95486 1093 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 ICAM3P32942 547 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 DMPKQ09013 629 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 C3AR1Q16581 482 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 LCN1P1Q5VSP4 162 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 CYP26C1Q6V0L0 522 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 PP632Q6XCG6 107 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 ARID3BQ8IVW6 561 aaPredicted RBP2.18□□□□□ -2.06
NUP54-208ENST00000508604 ARHGAP12Q8IWW6 846 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 CDK20Q8IZL9 346 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 MYRIPQ8NFW9 859 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 RHOXF1Q8NHV9 184 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 RPS6KC1Q96S38 1066 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 ZNF577Q9BSK1 485 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 URM1Q9BTM9 101 aaKnown RBP2.18□□□□□ -2.06
NUP54-208ENST00000508604 S1PR5Q9H228 398 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 DNAJC18Q9H819 358 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 POLR1BQ9H9Y6 1135 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 TNFRSF19Q9NS68 423 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 AMACRQ9UHK6 382 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.18□□□□□ -2.06
NUP54-208ENST00000508604 KIF25-AS1Q9Y6Z4 181 aa2.18□□□□□ -2.06
NUP54-208ENST00000508604 NPIPB15A6NHN6 443 aaPredicted RBP2.17□□□□□ -2.06
NUP54-208ENST00000508604 PI4K2BG5E9Z4 385 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 HAT1O14929 419 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 GALR3O60755 368 aaPredicted RBP2.17□□□□□ -2.06
NUP54-208ENST00000508604 RNASEH1O60930 286 aaKnown RBP2.17□□□□□ -2.06
NUP54-208ENST00000508604 VTNP04004 478 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 SLC2A2P11168 524 aaPredicted RBP2.17□□□□□ -2.06
NUP54-208ENST00000508604 BCL3P20749 454 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 NMBRP28336 390 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 PBX3P40426 434 aa2.17□□□□□ -2.06
NUP54-208ENST00000508604 SQLEQ14534 574 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms