RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 PPP4R1Q8TF05 950 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 P3H4Q92791 437 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 ULK4Q96C45 1275 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 PHF12Q96QT6 1004 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 OR2A14Q96R47 310 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 COPS8Q99627 209 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 AP1M1Q9BXS5 423 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 UNKQ9C0B0 810 aaKnown RBP14.18□□□□□ -0.14
TRAF4-212ENST00000498540 GBA3Q9H227 469 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 C10orf88Q9H8K7 445 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 ATP13A2Q9NQ11 1180 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 SPHK1Q9NYA1 384 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 SRPK3Q9UPE1 567 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 ENTPD4Q9Y227 616 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 FBN2P35556 2912 aa14.18□□□□□ -0.14
TRAF4-212ENST00000498540 C5orf60A6NFR6 353 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 CFAP99D6REC4 459 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 ZG16O60844 167 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 ITGALP20701 1170 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 COMTP21964 271 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 ADRA1AP35348 466 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 CDKN1CP49918 316 aaPredicted RBP14.17□□□□□ -0.14
TRAF4-212ENST00000498540 ZNF140P52738 457 aaPredicted RBP14.17□□□□□ -0.14
TRAF4-212ENST00000498540 GEMP55040 296 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 PER3P56645 1201 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 AIMP2Q13155 320 aaKnown RBP14.17□□□□□ -0.14
TRAF4-212ENST00000498540 MSLNQ13421 630 aaPredicted RBP14.17□□□□□ -0.14
TRAF4-212ENST00000498540 CAVIN1Q6NZI2 390 aaKnown RBP14.17□□□□□ -0.14
TRAF4-212ENST00000498540 RANBP10Q6VN20 620 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 UNC5AQ6ZN44 842 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 SNX20Q7Z614 316 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 RHOT2Q8IXI1 618 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 OR5AR1Q8NGP9 310 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 TFGQ92734 400 aaPredicted RBP14.17□□□□□ -0.14
TRAF4-212ENST00000498540 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.17□□□□□ -0.148e-6■■■□□ 18.3
TRAF4-212ENST00000498540 SLC6A20Q9NP91 592 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 SLC22A11Q9NSA0 550 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 TXLNGQ9NUQ3 528 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 SPTLC3Q9NUV7 552 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 IFNKQ9P0W0 207 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 FBXL4Q9UKA2 621 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 TRHDEQ9UKU6 1024 aa14.17□□□□□ -0.14
TRAF4-212ENST00000498540 CNTRLQ7Z7A1 2325 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 IGLV3-16A0A075B6K0 115 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 hCG_1818297A0A087WSY0 165 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 SPOPO43791 374 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 AKR1B10O60218 316 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 CD63P08962 238 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 PRSS56P0CW18 603 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 ITGAXP20702 1163 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 SLC1A1P43005 524 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 PRAMEF13Q5VWM6 474 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 CHRNA10Q9GZZ6 450 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 ZDHHC3Q9NYG2 299 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 PDZD2O15018 2839 aa14.16□□□□□ -0.14
TRAF4-212ENST00000498540 A0A0J9YY10 115 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 HACD1B0YJ81 288 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 ANXA9O76027 345 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 CHRM5P08912 532 aaPredicted RBP14.15□□□□□ -0.14
TRAF4-212ENST00000498540 TPBGLP0DKB5 382 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 EDN3P14138 238 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 ACRV1P26436 265 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 PSMB4P28070 264 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 RBL1P28749 1068 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 MC4RP32245 332 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 SHMT2P34897 504 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 TSFMP43897 325 aaKnown RBP14.15□□□□□ -0.14
TRAF4-212ENST00000498540 TPM4P67936 248 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 CDC16Q13042 620 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 RPA4Q13156 261 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 NAA30Q147X3 362 aaPredicted RBP14.15□□□□□ -0.14
TRAF4-212ENST00000498540 TFDP3Q5H9I0 405 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 TLDC1Q6P9B6 456 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 IGFL2Q6UWQ7 119 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 DNAJC22Q8N4W6 341 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 CLDN19Q8N6F1 224 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 DNAJB14Q8TBM8 379 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 HEXDCQ8WVB3 486 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 FAR1Q8WVX9 515 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 CNDP1Q96KN2 507 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 DNAJC7Q99615 494 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 GOLPH3Q9H4A6 298 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 VPS37BQ9H9H4 285 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 IRAK4Q9NWZ3 460 aa14.15□□□□□ -0.14
TRAF4-212ENST00000498540 TRBV5-4A0A0C4DH59 114 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 PRSS44E7EML9 344 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 SOCS6O14544 535 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 PSTPIP1O43586 416 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 CRTAMO95727 393 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 MMP11P24347 488 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 PEBP1P30086 187 aaKnown RBP14.14□□□□□ -0.15
TRAF4-212ENST00000498540 GCGRP47871 477 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 MARCKSL1P49006 195 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 ZNF169Q14929 603 aaPredicted RBP14.14□□□□□ -0.15
TRAF4-212ENST00000498540 AGAP7PQ5VUJ5 663 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 SP5Q6BEB4 398 aaPredicted RBP14.14□□□□□ -0.15
TRAF4-212ENST00000498540 DENND5AQ6IQ26 1287 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 ZNF449Q6P9G9 518 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 FJX1Q86VR8 437 aa14.14□□□□□ -0.15
TRAF4-212ENST00000498540 SERPINA9Q86WD7 417 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms