RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 SNRPD2P62316 118 aaKnown RBP11.47□□□□□ -0.57
HDAC4-210ENST00000493582 FCHO2Q0JRZ9 810 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 TSNQ15631 228 aaKnown RBP11.47□□□□□ -0.57
HDAC4-210ENST00000493582 SYCE2Q6PIF2 218 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 KLHDC8BQ8IXV7 354 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 SLC7A6Q92536 515 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 RMDN1Q96DB5 314 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 DUSP16Q9BY84 665 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 NDFIP2Q9NV92 336 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 FAM50BQ9Y247 325 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 ASB1Q9Y576 335 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 A3GALT2U3KPV4 340 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 RGS5O15539 181 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 MAFKO60675 156 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 MLYCDO95822 493 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 UROSP10746 265 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 IL7P13232 177 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 PKLRP30613 574 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 HOXA9P31269 272 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 UQCRC1P31930 480 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 TNFSF8P32971 234 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 GMPSP49915 693 aaPredicted RBP11.47□□□□□ -0.57
HDAC4-210ENST00000493582 SERPINH1P50454 418 aaKnown RBP11.47□□□□□ -0.57
HDAC4-210ENST00000493582 UGT2B15P54855 530 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 MAXP61244 160 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 SCAPQ12770 1279 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 KEAP1Q14145 624 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 BAK1Q16611 211 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 GPAT3Q53EU6 434 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 PXDC1Q5TGL8 231 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 Q6ZPB1 254 aaPredicted RBP11.47□□□□□ -0.57
HDAC4-210ENST00000493582 UBE2J2Q8N2K1 259 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 AADATQ8N5Z0 425 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 RNF34Q969K3 372 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 TBATAQ96M53 351 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 TSGA13Q96PP4 275 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 SIGLEC11Q96RL6 698 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 SLC30A2Q9BRI3 323 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 NDRG4Q9ULP0 352 aaKnown RBP11.47□□□□□ -0.57
HDAC4-210ENST00000493582 ABCG2Q9UNQ0 655 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 GRIP1Q9Y3R0 1128 aa11.47□□□□□ -0.57
HDAC4-210ENST00000493582 B8ZZF3 427 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 CDC7O00311 574 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 AKR7A2O43488 359 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 ZNF780AO75290 641 aaPredicted RBP11.46□□□□□ -0.57
HDAC4-210ENST00000493582 MMP10P09238 476 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 USP17L7P0C7H9 530 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 EFNA1P20827 205 aaPredicted RBP11.46□□□□□ -0.57
HDAC4-210ENST00000493582 CCNCP24863 283 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 PTGR1Q14914 329 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 RFTN2Q52LD8 501 aaPredicted RBP11.46□□□□□ -0.57
HDAC4-210ENST00000493582 DCAF15Q66K64 600 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 SHQ1Q6PI26 577 aaKnown RBP11.46□□□□□ -0.57
HDAC4-210ENST00000493582 SLC46A3Q7Z3Q1 461 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 DTX3Q8N9I9 347 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 OR8J3Q8NGG0 315 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 UBASH3BQ8TF42 649 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 APH1BQ8WW43 257 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 SLC25A37Q9NYZ2 338 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 GINS2Q9Y248 185 aa11.46□□□□□ -0.57
HDAC4-210ENST00000493582 COL11A1P12107 1806 aaPredicted RBP11.46□□□□□ -0.58
HDAC4-210ENST00000493582 ARNTLO00327 626 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 WNT10BO00744 389 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 ECI2O75521 394 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 FKBP9O95302 570 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 VIPP01282 170 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 ITGA2P17301 1181 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 MSH3P20585 1137 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 M6PRP20645 277 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 FDXRP22570 491 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 SLC19A1P41440 591 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 HTR6P50406 440 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 RPP38P78345 283 aaKnown RBP11.46□□□□□ -0.58
HDAC4-210ENST00000493582 TRIM60Q495X7 471 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 TSPYL5Q86VY4 417 aaPredicted RBP11.46□□□□□ -0.58
HDAC4-210ENST00000493582 ZDHHC21Q8IVQ6 265 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 ESX1Q8N693 406 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 ZMIZ2Q8NF64 920 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 KBTBD8Q8NFY9 601 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 OR52B6Q8NGF0 335 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 PPP1R13LQ8WUF5 828 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 COPS5Q92905 334 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 CCDC120Q96HB5 630 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 RIPOR3Q96MK2 946 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 SLC39A8Q9C0K1 460 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 SLC6A13Q9NSD5 602 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 TMEM39AQ9NV64 488 aa11.46□□□□□ -0.58
HDAC4-210ENST00000493582 POLR3HQ9Y535 204 aaPredicted RBP11.46□□□□□ -0.58
HDAC4-210ENST00000493582 BRCA1P38398 1863 aaKnown RBP11.46□□□□□ -0.58
HDAC4-210ENST00000493582 PRSS56P0CW18 603 aa11.45□□□□□ -0.58
HDAC4-210ENST00000493582 NPR3P17342 541 aa11.45□□□□□ -0.58
HDAC4-210ENST00000493582 HNF4AP41235 474 aa11.45□□□□□ -0.58
HDAC4-210ENST00000493582 NUDT6P53370 316 aa11.45□□□□□ -0.58
HDAC4-210ENST00000493582 ITKQ08881 620 aa11.45□□□□□ -0.58
HDAC4-210ENST00000493582 C9orf57Q5W0N0 161 aa11.45□□□□□ -0.58
HDAC4-210ENST00000493582 KDM4DQ6B0I6 523 aa11.45□□□□□ -0.58
HDAC4-210ENST00000493582 CCSAPQ6IQ19 270 aaPredicted RBP11.45□□□□□ -0.58
HDAC4-210ENST00000493582 PAQR3Q6TCH7 311 aa11.45□□□□□ -0.58
HDAC4-210ENST00000493582 CLEC20AQ6ZU45 233 aa11.45□□□□□ -0.58
HDAC4-210ENST00000493582 PAQR9Q6ZVX9 377 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms