RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PTBP2Q9UKA9 531 aaKnown RBP11.89□□□□□ -0.51
HDAC6-230ENST00000488543 CNOT6Q9ULM6 557 aaKnown RBP11.89□□□□□ -0.51
HDAC6-230ENST00000488543 PRR23AA6NEV1 266 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 EIF3FO00303 357 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-230ENST00000488543 RAD51BO15315 384 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 DNAJA2O60884 412 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 RECQL5O94762 991 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-230ENST00000488543 AP2A2O94973 939 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 CREB5Q02930 508 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 ZP2Q05996 745 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 ELP6Q0PNE2 266 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 STARD3Q14849 445 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 PIGGQ5H8A4 983 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 OGFRL1Q5TC84 451 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-230ENST00000488543 FAM46CQ5VWP2 391 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 IYDQ6PHW0 289 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 VRK3Q8IV63 474 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 RAVER1Q8IY67 606 aaKnown RBP11.89□□□□□ -0.51
HDAC6-230ENST00000488543 GANCQ8TET4 914 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 GLYATL1Q969I3 302 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 HDAC8Q9BY41 377 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 FADS3Q9Y5Q0 445 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 PTGDR2Q9Y5Y4 395 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 KRBA1A5PL33 1030 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 NPC1O15118 1278 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 SLC22A2O15244 555 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 NUAK1O60285 661 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 THRAP10827 490 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 C6P13671 934 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 MLF2Q15773 248 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-230ENST00000488543 C11orf91Q3C1V1 193 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 AP1ARQ63HQ0 302 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 LARP4Q71RC2 724 aaKnown RBP eCLIP11.88□□□□□ -0.517e-7■■■■■ 35.5
HDAC6-230ENST00000488543 SPATA24Q86W54 205 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 RASGEF1AQ8N9B8 481 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 HMGCLL1Q8TB92 370 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 TWIST2Q8WVJ9 160 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 C19orf60Q96EN9 201 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 TMEM79Q9BSE2 394 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 HGH1Q9BTY7 390 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 RDH14Q9HBH5 336 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 FBXL12Q9NXK8 326 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ADA2Q9NZK5 511 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 DUSP12Q9UNI6 340 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 PSMD13Q9UNM6 376 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ST14Q9Y5Y6 855 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ATP6AP2A0A1C7CYW4 349 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 IGLON5A6NGN9 336 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 C9JVG2 144 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 CFAP99D6REC4 459 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 PIP5K1BO14986 540 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 INPP4BO15327 924 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ATP6AP2O75787 350 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 PCDH8O95206 1070 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 MLYCDO95822 493 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 GLULP15104 373 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 MSH3P20585 1137 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ADSLP30566 484 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-230ENST00000488543 CHN2P52757 468 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 NME5P56597 212 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 NRF1Q16656 503 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 LDLRAP1Q5SW96 308 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 PLEKHS1Q5SXH7 462 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ZNF776Q68DI1 518 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ZNF765Q7L2R6 523 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 FAM124AQ86V42 546 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 RASGRP3Q8IV61 690 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ADHFE1Q8IWW8 467 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 BEND7Q8N7W2 519 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-230ENST00000488543 OR56A4Q8NGH8 313 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 OR9I1Q8NGQ6 314 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 UBTD2Q8WUN7 234 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 KLK6Q92876 244 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ATP6V1E2Q96A05 226 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 ZNF382Q96SR6 550 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 SLC39A3Q9BRY0 314 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 GIMAP2Q9UG22 337 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 RIMS3Q9UJD0 308 aa11.88□□□□□ -0.51
HDAC6-230ENST00000488543 OR7A17O14581 309 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 CASQ2O14958 399 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-230ENST00000488543 PEX1O43933 1283 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 LZTS3O60299 673 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-230ENST00000488543 ESRRBO95718 433 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 GUCA1CO95843 209 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 S100BP04271 92 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-230ENST00000488543 MPC1LP0DKB6 136 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 CHRNB1P11230 501 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 C5AR1P21730 350 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 CTSCP53634 463 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 MRPS21P82921 87 aaKnown RBP11.87□□□□□ -0.51
HDAC6-230ENST00000488543 ART3Q13508 389 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 RBBP7Q16576 425 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 MBOAT1Q6ZNC8 495 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 GOLGA7Q7Z5G4 137 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 PHYKPLQ8IUZ5 450 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 METTL25Q8N6Q8 603 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 RHBDF1Q96CC6 855 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 MRGPRX1Q96LB2 322 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 LRGUKQ96M69 825 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 CENPKQ9BS16 269 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms