RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ZFC3H1O60293 1989 aaKnown RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 WDR91A4D1P6 747 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 FAM221BA6H8Z2 402 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 A6NCN8 305 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 NEMP2A6NFY4 417 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 PDZK1P1A8MUH7 402 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 ARHGEF33A8MVX0 844 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 GIPC1O14908 333 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 STK16O75716 305 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 RPS17P08708 135 aaKnown RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 ERGP11308 486 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 XRCC1P18887 633 aaPredicted RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 BGNP21810 368 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 ITPKAP23677 461 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 MAOBP27338 520 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 GMPRP36959 345 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 SLC1A6P48664 564 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 NAGLUP54802 743 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 PCDH1Q08174 1060 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 ABRQ12979 859 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 PRKAA1Q13131 559 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 SIM2Q14190 667 aaPredicted RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 PHKG1Q16816 387 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 TPRG1LQ5T0D9 272 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 NAPRTQ6XQN6 538 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 FAM83HQ6ZRV2 1179 aaPredicted RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 FRMD7Q6ZUT3 714 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 RD3Q7Z3Z2 195 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 CRLF3Q8IUI8 442 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 DEFB119Q8N690 84 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 LILRA3Q8N6C8 439 aaPredicted RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 HMGCLL1Q8TB92 370 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 SETD7Q8WTS6 366 aaKnown RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 NAT14Q8WUY8 206 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 DLG3Q92796 817 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 PHF21BQ96EK2 531 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 FAR2Q96K12 515 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 RMDN2Q96LZ7 410 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 C12orf66Q96MD2 445 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 MECRQ9BV79 373 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 GATA5Q9BWX5 397 aaPredicted RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 CD244Q9BZW8 370 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 ILKAPQ9H0C8 392 aaPredicted RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 WWP1Q9H0M0 922 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 PCBD2Q9H0N5 130 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 TMEM168Q9H0V1 697 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 C12orf65Q9H3J6 166 aaKnown RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 SLC32A1Q9H598 525 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 STN1Q9H668 368 aaKnown RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 KIR3DX1Q9H7L2 352 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 PFDN4Q9NQP4 134 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 TM7SF3Q9NS93 570 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 DNAJC28Q9NX36 388 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 WWOXQ9NZC7 414 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 GPRC5BQ9NZH0 403 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 ADAMTS6Q9UKP5 1117 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 IKZF3Q9UKT9 509 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 KCNK6Q9Y257 313 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 PRKAB1Q9Y478 270 aa9.9□□□□□ -0.82
USP39-215ENST00000481409 PCYT1BQ9Y5K3 369 aaPredicted RBP9.9□□□□□ -0.82
USP39-215ENST00000481409 TCP11X1B4DZS4 312 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 K7EPI3 171 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 UGDHO60701 494 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 EDF1O60869 148 aaKnown RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 SUPT7LO94864 414 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 FAM107AO95990 144 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 SYPP08247 313 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 FGF4P08620 206 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 VIMP08670 466 aaKnown RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 MTHFD1P11586 935 aaKnown RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 CTSKP43235 329 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 CSNK1EP49674 416 aaKnown RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 GYS2P54840 703 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 PKNOX1P55347 436 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 OCRLQ01968 901 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 ZNF33BQ06732 778 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 BST1Q10588 318 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 CDC16Q13042 620 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 LCP2Q13094 533 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 KRT33BQ14525 404 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 IYDQ6PHW0 289 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 SLC23A3Q6PIS1 610 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 EFL1Q7Z2Z2 1120 aaKnown RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 TAF8Q7Z7C8 310 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 SLC9B2Q86UD5 537 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 SPATS2Q86XZ4 545 aaKnown RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 NRROSQ86YC3 692 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 WDR75Q8IWA0 830 aaKnown RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 OR56A3Q8NH54 315 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 ZNF483Q8TF39 744 aaPredicted RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 SH3KBP1Q96B97 665 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 TMEM237Q96Q45 408 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 ELF4Q99607 663 aaPredicted RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 MIPEPQ99797 713 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 CCT7Q99832 543 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 UNKQ9C0B0 810 aaKnown RBP9.89□□□□□ -0.83
USP39-215ENST00000481409 UCK1Q9HA47 277 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 TAAR2Q9P1P5 351 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 OPTCQ9UBM4 332 aa9.89□□□□□ -0.83
USP39-215ENST00000481409 TBC1D29Q9UFV1 150 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 164.6 ms