RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 BMPERQ8N8U9 685 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 AGBL5Q8NDL9 886 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 CD200R1Q8TD46 325 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 PYROXD1Q8WU10 500 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 KCNJ9Q92806 393 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 USP7Q93009 1102 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 RNF31Q96EP0 1072 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 IL17FQ96PD4 163 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 MENTQ9BUN1 341 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 RAB33BQ9H082 229 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 TRIT1Q9H3H1 467 aaKnown RBP9.41□□□□□ -0.9
HDAC3-208ENST00000476739 SRMSQ9H3Y6 488 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 LRRC4CQ9HCJ2 640 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 APMAPQ9HDC9 416 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 EPHA6Q9UF33 1036 aa9.41□□□□□ -0.9
HDAC3-208ENST00000476739 TCRBV9S1A1TA0A576 114 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 GSAPA4D1B5 854 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 SRRM3A6NNA2 597 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 KPNA5O15131 536 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 RASSF9O75901 435 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 MATN4O95460 622 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 C1orf105O95561 183 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 ITGA2BP08514 1039 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 ANKRD34CP0C6C1 535 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 MCM3P25205 808 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 RBMS1P29558 406 aaKnown RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 PEBP1P30086 187 aaKnown RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 CSTF2P33240 577 aaKnown RBP eCLIP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 MAGEA4P43358 317 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 CAV1Q03135 178 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 MGAT5Q09328 741 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 KCNAB1Q14722 419 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 KYNUQ16719 465 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 HECTD2Q5U5R9 776 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 ANKS6Q68DC2 871 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 UNC5DQ6UXZ4 953 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 CYHR1Q6ZMK1 362 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 KIAA0408Q6ZU52 694 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 ZNF771Q7L3S4 317 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 PRSS42Q7Z5A4 293 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 GALNT7Q86SF2 657 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 CLEC14AQ86T13 490 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 AMIGO1Q86WK6 493 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 FAM129CQ86XR2 697 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 FAM20CQ8IXL6 584 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 PALM2Q8IXS6 379 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 CPNE9Q8IYJ1 553 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 LSMEM2Q8N112 164 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 C2orf73Q8N5S3 287 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 CEP112Q8N8E3 955 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 LINC01555Q8NAE3 123 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 MNS1Q8NEH6 495 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 FLVCR1-AS1Q8TAF5 88 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 SKA2Q8WVK7 121 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 KLHL6Q8WZ60 621 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 FGF11Q92914 225 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 ZDHHC12Q96GR4 267 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 NAF1Q96HR8 494 aaKnown RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 ZNF578Q96N58 590 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 OLFM1Q99784 485 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 CTRCQ99895 268 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 MCMBPQ9BTE3 642 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 TWSG1Q9GZX9 223 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 KLHL25Q9H0H3 589 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 CCDC68Q9H2F9 335 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 ZNF768Q9H5H4 540 aaKnown RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 SIDT1Q9NXL6 827 aaKnown RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 SPHK1Q9NYA1 384 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 SEMA5BQ9P283 1151 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 DHRS7Q9Y394 339 aa9.4□□□□□ -0.9
HDAC3-208ENST00000476739 URB1O60287 2271 aaKnown RBP9.4□□□□□ -0.9
HDAC3-208ENST00000476739 FREM2Q5SZK8 3169 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 SDK2Q58EX2 2172 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 ARHGEF33A8MVX0 844 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 B4E171 279 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 VPS26AO75436 327 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 SNRNP200O75643 2136 aaKnown RBP9.39□□□□□ -0.91
HDAC3-208ENST00000476739 CHRM5P08912 532 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-208ENST00000476739 PVRP15151 417 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 PRDX3P30048 256 aaKnown RBP9.39□□□□□ -0.91
HDAC3-208ENST00000476739 ATP5DP30049 168 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 PKLRP30613 574 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 EIF2S3P41091 472 aaKnown RBP9.39□□□□□ -0.91
HDAC3-208ENST00000476739 TSPAN7P41732 249 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 ERVPABLB-1P60509 514 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 MC2RQ01718 297 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 KLHL35Q6PF15 583 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 PAQR3Q6TCH7 311 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 TMEM207Q6UWW9 146 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 C3orf62Q6ZUJ4 267 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 PIWIL4Q7Z3Z4 852 aaKnown RBP9.39□□□□□ -0.91
HDAC3-208ENST00000476739 STRA8Q7Z7C7 330 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 TRIM73Q86UV7 250 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 TAX1BP1Q86VP1 789 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 ZC3HC1Q86WB0 502 aaKnown RBP9.39□□□□□ -0.91
HDAC3-208ENST00000476739 ZFAND4Q86XD8 727 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 DCUN1D3Q8IWE4 304 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 GPATCH11Q8N954 259 aa9.39□□□□□ -0.91
HDAC3-208ENST00000476739 SNIP1Q8TAD8 396 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms