RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 PTCHD3Q3KNS1 767 aa16.91■□□□□ 0.3
COL7A1-208ENST00000470076 LYPLAL1Q5VWZ2 237 aa16.91■□□□□ 0.3
COL7A1-208ENST00000470076 UNC5AQ6ZN44 842 aa16.91■□□□□ 0.3
COL7A1-208ENST00000470076 HPS6Q86YV9 775 aa16.91■□□□□ 0.3
COL7A1-208ENST00000470076 C19orf47Q8N9M1 422 aaKnown RBP16.91■□□□□ 0.3
COL7A1-208ENST00000470076 TTC1Q99614 292 aa16.91■□□□□ 0.3
COL7A1-208ENST00000470076 BAG1Q99933 345 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-208ENST00000470076 OR6C2Q9NZP2 312 aa16.91■□□□□ 0.3
COL7A1-208ENST00000470076 VPS4AQ9UN37 437 aa16.91■□□□□ 0.3
COL7A1-208ENST00000470076 PRSS21Q9Y6M0 314 aa16.91■□□□□ 0.3
COL7A1-208ENST00000470076 AP1M2Q9Y6Q5 423 aa16.91■□□□□ 0.3
COL7A1-208ENST00000470076 FER1L5A0AVI2 2057 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 SLC5A10A0PJK1 596 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 CCDC78A2IDD5 438 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 CCDC162PA2VCL2 907 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 F8W8V4 182 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 KDM1AO60341 852 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 FTCDO95954 541 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 GP1BBP13224 206 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 UGT2B7P16662 529 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 STIP1P31948 543 aaKnown RBP16.9■□□□□ 0.3
COL7A1-208ENST00000470076 FOXN2P32314 431 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 NADK2Q4G0N4 442 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 SYTL3Q4VX76 610 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 FAM69BQ5VUD6 431 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 ZNF385CQ66K41 422 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-208ENST00000470076 RAB43Q86YS6 212 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 TAB3Q8N5C8 712 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-208ENST00000470076 DNAAF3Q8N9W5 541 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 GALNT11Q8NCW6 608 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 OR52K1Q8NGK4 314 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 OR5K2Q8NHB8 316 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 CPT1CQ8TCG5 803 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 OR2A14Q96R47 310 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 FAM60AQ9NP50 221 aa16.9■□□□□ 0.3
COL7A1-208ENST00000470076 SNRNP200O75643 2136 aaKnown RBP16.9■□□□□ 0.3
COL7A1-208ENST00000470076 TCRBV7S2A1N4TA0A589 114 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 HEATR9A2RTY3 570 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 OR51F1A6NGY5 319 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 DPM1O60762 260 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 OR2B3O76000 313 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 SORBS2O94875 1100 aaKnown RBP16.89■□□□□ 0.29
COL7A1-208ENST00000470076 CHRM5P08912 532 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-208ENST00000470076 BRD3Q15059 726 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 CCDC38Q502W7 563 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 RHBDD2Q6NTF9 364 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 TRIM73Q86UV7 250 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 ZBTB2Q8N680 514 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 GLIS1Q8NBF1 620 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 FDCSPQ8NFU4 85 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 OR13J1Q8NGT2 312 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 HES6Q96HZ4 224 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 IP6K3Q96PC2 410 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 RIMKLBQ9ULI2 386 aa16.89■□□□□ 0.29
COL7A1-208ENST00000470076 TDRKHQ9Y2W6 561 aaKnown RBP16.89■□□□□ 0.29
COL7A1-208ENST00000470076 SHANK1Q9Y566 2161 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 A0A0J9YY10 115 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 BHMG1C9JSJ3 638 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-208ENST00000470076 H3BMH7 237 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 ZNF185O15231 689 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 SUN1O94901 812 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 CD63P08962 238 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 TPBGLP0DKB5 382 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 FDFT1P37268 417 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 GABRA4P48169 554 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 KIR2DS3Q14952 304 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 ZIC1Q15915 447 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 AFTPHQ6ULP2 937 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 TMEM139Q8IV31 216 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 FLVCR1-AS1Q8TAF5 88 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 PROKR1Q8TCW9 393 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 HDAC10Q969S8 669 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 SGSM3Q96HU1 749 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 PSMG3-AS1Q96PY0 264 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 RANBP9Q96S59 729 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 FRMD8P1Q9BZ68 369 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-208ENST00000470076 RBSNQ9H1K0 784 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 SPHK1Q9NYA1 384 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 GPR83Q9NYM4 423 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 MAP4K5Q9Y4K4 846 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 ESPL1Q14674 2120 aa16.88■□□□□ 0.29
COL7A1-208ENST00000470076 CCDC88CQ9P219 2028 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 ANKRD12Q6UB98 2062 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 KLF7O75840 302 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-208ENST00000470076 ADRA1DP25100 572 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 PPARGP37231 505 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-208ENST00000470076 ACVR1Q04771 509 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 ATP1A4Q13733 1029 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 OASLQ15646 514 aaKnown RBP16.87■□□□□ 0.29
COL7A1-208ENST00000470076 SLC5A12Q1EHB4 618 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 DEFB110Q30KQ9 67 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 DNAJC21Q5F1R6 531 aaKnown RBP16.87■□□□□ 0.29
COL7A1-208ENST00000470076 TSTD2Q5T7W7 516 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 JMJD6Q6NYC1 403 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-208ENST00000470076 NAPRTQ6XQN6 538 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 PPP1R21Q6ZMI0 780 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 NLRP9Q7RTR0 991 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 ATG4AQ8WYN0 398 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 NUDT9Q9BW91 350 aa16.87■□□□□ 0.29
COL7A1-208ENST00000470076 TSSK1BQ9BXA7 367 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms