RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 AREL1O15033 823 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 MTX2O75431 263 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 WDR47O94967 919 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CLDN9O95484 217 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 PDYNP01213 254 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 C1SP09871 688 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 BCKDHAP12694 445 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CAPGP40121 348 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 MNX1P50219 401 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 NEK2P51955 445 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 MAD2L1Q13257 205 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 PLCL1Q15111 1095 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 KCTD21Q4G0X4 260 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 USP39Q53GS9 565 aaKnown RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CACHD1Q5VU97 1274 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 ENPP6Q6UWR7 440 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 USP45Q70EL2 814 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 UBE2R2Q712K3 238 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 METTL3Q86U44 580 aaKnown RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 TMEM25Q86YD3 366 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CHCHD4Q8N4Q1 142 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CHST14Q8NCH0 376 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 FBXO30Q8TB52 745 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 PYCR2Q96C36 320 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 HIC2Q96JB3 615 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 OR52E6Q96RD3 313 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CORO1BQ9BR76 489 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 BEGAINQ9BUH8 593 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 ACPTQ9BZG2 426 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 SLC32A1Q9H598 525 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CLMPQ9H6B4 373 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 TMEM39AQ9NV64 488 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 C1orf109Q9NX04 203 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 RSL24D1Q9UHA3 163 aaKnown RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 TBX21Q9UL17 535 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 HS3ST2Q9Y278 367 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF510Q9Y2H8 683 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 NUP214P35658 2090 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 KIAA1671Q9BY89 1806 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 BMP10O95393 424 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 B3GALT4O96024 378 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 ASLP04424 464 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 C8AP07357 584 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 C7P10643 843 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CCL5P13501 91 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 TCF3P15923 654 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CCR2P41597 374 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 PRMT2P55345 433 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 SH3BGRP55822 239 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 PHC1P78364 1004 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 CYP4F3Q08477 520 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 ARHGEF6Q15052 776 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 NKG7Q16617 165 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 ZIK1Q3SY52 487 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 Q6ZVU0 165 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 PHACTR4Q8IZ21 702 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF548Q8NEK5 533 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-217ENST00000466159 SLC22A17Q8WUG5 538 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 TMBIM1Q969X1 311 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 OCEL1Q9H607 264 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 BRD9Q9H8M2 597 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 C8orf4Q9NR00 106 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 HCFC1R1Q9NWW0 138 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 B4GALT6Q9UBX8 382 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 UTS2RQ9UKP6 389 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 DLGAP4Q9Y2H0 992 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 PPIL1Q9Y3C6 166 aa8.74□□□□□ -1.01
SYNE1-217ENST00000466159 A0A087WXM4 84 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 H0Y858 1186 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 GSTA4O15217 222 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 CCL16O15467 120 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 TULP3O75386 442 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 TRMUO75648 421 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 IL6P05231 212 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 CBSLP0DN79 551 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 RAP2AP10114 183 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 ITGB8P26012 769 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 AOAHP28039 575 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 CBSP35520 551 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 SPINT3P49223 89 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 IST1P53990 364 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 PTPN5P54829 565 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 CHRNB3Q05901 458 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 BOP1Q14137 746 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 FAM98BQ52LJ0 330 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 SERPINA13PQ6UXR4 307 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 RNF165Q6ZSG1 346 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 LPCAT2Q7L5N7 544 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 PATL1Q86TB9 770 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 SLC22A15Q8IZD6 547 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 C10orf111Q8N326 155 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 TNIP2Q8NFZ5 429 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 SELENOMQ8WWX9 145 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 AURKBQ96GD4 344 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 TOX2Q96NM4 488 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 MCCC1Q96RQ3 725 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 CD320Q9NPF0 282 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 THEGQ9P2T0 379 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 LIMD1Q9UGP4 676 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms