RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 RPS17P08708 135 aaKnown RBP11.48□□□□□ -0.57
CPSF3-202ENST00000460593 SLC10A3P09131 477 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 S100A5P33763 92 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 GPLD1P80108 840 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 TBRG1Q3YBR2 411 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 MARCH8Q5T0T0 291 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 GPR153Q6NV75 609 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 VTCN1Q7Z7D3 282 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 ZDHHC21Q8IVQ6 265 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 SVOPLQ8N434 492 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 STAG3L4Q8TBR4 150 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 GIPC2Q8TF65 315 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 SLC13A3Q8WWT9 602 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 MTFMTQ96DP5 389 aaKnown RBP11.48□□□□□ -0.57
CPSF3-202ENST00000460593 ST6GAL2Q96JF0 529 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 RDH12Q96NR8 316 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 PDP1Q9P0J1 537 aaPredicted RBP11.48□□□□□ -0.57
CPSF3-202ENST00000460593 GABRQQ9UN88 632 aa11.48□□□□□ -0.57
CPSF3-202ENST00000460593 CENPXA8MT69 81 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 TLL1O43897 1013 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 SEMA3DO95025 777 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 ABCB1P08183 1280 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 IFI30P13284 250 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 SLC19A1P41440 591 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 TGM4P49221 684 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 SLC26A2P50443 739 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 DAB2P98082 770 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 MAD2L1BPQ15013 274 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 PTCHD3Q3KNS1 767 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF484Q5JVG2 852 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 BRMS1LQ5PSV4 323 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 CIR1Q86X95 450 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 RIOX2Q8IUF8 465 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 KLHDC8BQ8IXV7 354 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 SUN5Q8TC36 379 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 GTF2H4Q92759 462 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 HMCESQ96FZ2 354 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 ASB2Q96Q27 587 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 MMP27Q9H306 513 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 AGO3Q9H9G7 860 aaKnown RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF112Q9UJU3 913 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 CARD8Q9Y2G2 431 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 MAU2Q9Y6X3 613 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 THSD7AQ9UPZ6 1657 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 TLR5O60602 858 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 APBA3O96018 575 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 HOXA9P31269 272 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 CDK10Q15131 360 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 MAPKAPK3Q16644 382 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 TIGD6Q17RP2 521 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 LRRC26Q2I0M4 334 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 CPZQ66K79 652 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 ALKAL1Q6UXT8 129 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 PRSS48Q7RTY5 328 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 DPP10Q8N608 796 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 ATG16L2Q8NAA4 619 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 TSPEARQ8WU66 669 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 SLC38A4Q969I6 547 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 PSMG2Q969U7 264 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 KIAA1191Q96A73 305 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 ITPAQ9BY32 194 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 RANGRFQ9HD47 186 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 WBP11Q9Y2W2 641 aaKnown RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 BRCA2P51587 3418 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 PLXNA1Q9UIW2 1896 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 H3BQ06 376 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 ONECUT3O60422 494 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 VPS4BO75351 444 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 ARHGAP1Q07960 439 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 SLC14A1Q13336 389 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 GRIK4Q16099 956 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 KYAT1Q16773 422 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 SMU1Q2TAY7 513 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 SPATS1Q496A3 300 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 PNCKQ6P2M8 343 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 FAM217AQ8IXS0 508 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 EEF1AKMT1Q8WVE0 214 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 APH1BQ8WW43 257 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 KCNC2Q96PR1 638 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 AARSD1Q9BTE6 412 aaKnown RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 TFB2MQ9H5Q4 396 aaKnown RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 GORASP2Q9H8Y8 452 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 TBC1D24Q9ULP9 559 aa11.47□□□□□ -0.57
CPSF3-202ENST00000460593 DNMT3AQ9Y6K1 912 aaPredicted RBP11.47□□□□□ -0.57
CPSF3-202ENST00000460593 A0A0G2JMP0 313 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 A0A0X1KG70 313 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 MROH6A6NGR9 719 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 PER2O15055 1255 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 ANKRD28O15084 1053 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 DNAJB5O75953 348 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 ALX3O95076 343 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 CRYZL1O95825 349 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 DCAF4L1Q3SXM0 396 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 SIGIRRQ6IA17 410 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 TTC23LQ6PF05 361 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 FBLIM1Q8WUP2 373 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF566Q969W8 418 aa11.46□□□□□ -0.57
CPSF3-202ENST00000460593 IMP4Q96G21 291 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms