RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TBC1D30Q9Y2I9 924 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PCDHGB1Q9Y5G3 927 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PCDHA10Q9Y5I2 948 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ECM29Q5VYK3 1845 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 MKI67P46013 3256 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF716A6NP11 495 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 H0YGN5 161 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 DNM1LO00429 736 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PODXLO00592 558 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SH2B2O14492 632 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TAF5LO75529 589 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 RHBDL1O75783 438 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 RPP40O75818 363 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SUN1O94901 812 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 AKR7A3O95154 331 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CSF2P04141 144 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF735P0CB33 412 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF12P17014 697 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 KLRK1P26718 216 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 GJA4P35212 333 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC1A3P43003 542 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TOB1P50616 345 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 DGKEP52429 567 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CAPZA1P52907 286 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 KCNJ2P63252 427 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PRKCQQ04759 706 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 RASGEF1BQ0VAM2 473 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TARDBPQ13148 414 aaKnown RBP eCLIP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SSX2Q16385 188 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM83EQ2M2I3 478 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 EDRF1Q3B7T1 1238 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 HSDL1Q3SXM5 330 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 LIN52Q52LA3 116 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF311Q5JNZ3 666 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 RIPPLY2Q5TAB7 128 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC9C2Q5TAH2 1124 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CYB5R2Q6BCY4 276 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ZSCAN25Q6NSZ9 544 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 NIPAL1Q6NVV3 410 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PSRC1Q6PGN9 363 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TTC33Q6PID6 262 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 VITQ6UXI7 678 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 C22orf34Q6ZV56 151 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 USP49Q70CQ1 688 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM129CQ86XR2 697 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 HPS6Q86YV9 775 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 OFCC1Q8IZS5 231 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CYP4Z2PQ8N1L4 340 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 THEM5Q8N1Q8 247 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 POU5F2Q8N7G0 328 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 EIF1ADQ8N9N8 165 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 OR5M1Q8NGP8 315 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 OR1N1Q8NGS0 311 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 OR13C3Q8NGS6 347 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 LKAAEAR1Q8TD35 194 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 NAT14Q8WUY8 206 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ING5Q8WYH8 240 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 NKD2Q969F2 451 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 YIPF5Q969M3 257 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TSPAN17Q96FV3 270 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 DUS3LQ96G46 650 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 INTS4Q96HW7 963 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 FCRL2Q96LA5 508 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 C9orf72Q96LT7 481 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 C17orf80Q9BSJ5 609 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 COA1Q9GZY4 146 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SAV1Q9H4B6 383 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ASB8Q9H765 288 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 C17orf75Q9HAS0 396 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TBC1D13Q9NVG8 400 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PNPOQ9NVS9 261 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 IL20RAQ9UHF4 553 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 POMT1Q9Y6A1 747 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CFAP20Q9Y6A4 193 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CSNK1G3Q9Y6M4 447 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SPEF2Q9C093 1822 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PITPNM2Q9BZ72 1349 aa4.71□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF646O15015 1829 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 ESYT2A0FGR8 921 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 BTBD17A6NE02 478 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 EIF4E1BA6NMX2 242 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 MEIS2O14770 477 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 PIP5K1BO14986 540 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 ADAM20O43506 726 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 IPO13O94829 963 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 SORBS2O94875 1100 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 KCNK5O95279 499 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 PDGFBP01127 241 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 CRYGCP07315 174 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 CELA2BP08218 269 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 ENO3P13929 434 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 TYRP14679 529 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 PTPN4P29074 926 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 HOXA9P31269 272 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 CAPGP40121 348 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 MDH1P40925 334 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 SLC6A9P48067 706 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 CACNA2D1P54289 1103 aa4.71□□□□□ -1.66
CCDC88A-209ENST00000456975 PDE1AP54750 535 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms