RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 SAGE2PA6NJ88 616 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 CENPBD1B2RD01 187 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 PRMT5O14744 637 aaPredicted RBP8.4□□□□□ -1.06
HPS4-206ENST00000439453 AREL1O15033 823 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 IDH3BO43837 385 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 S1PR4O95977 384 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 MTHFD2P13995 350 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 PRKACGP22612 351 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 FMO3P31513 532 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 GRIK1P39086 918 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 OR1G1P47890 313 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 TRPC1P48995 793 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 ST13P50502 369 aaKnown RBP8.4□□□□□ -1.06
HPS4-206ENST00000439453 PPP1R8Q12972 351 aaKnown RBP8.4□□□□□ -1.06
HPS4-206ENST00000439453 LCP2Q13094 533 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 PCSK7Q16549 785 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 SMUG1Q53HV7 270 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 DESI1Q6ICB0 168 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 TXNDC11Q6PKC3 985 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 DLEU7Q6UYE1 221 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 FKBP9P1Q75LS8 142 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 DCP2Q8IU60 420 aaKnown RBP8.4□□□□□ -1.06
HPS4-206ENST00000439453 FBLIM1Q8WUP2 373 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 LGALS12Q96DT0 336 aa8.4□□□□□ -1.06
HPS4-206ENST00000439453 PABPC5Q96DU9 382 aaKnown RBP8.4□□□□□ -1.06
HPS4-206ENST00000439453 REXO5Q96IC2 774 aaKnown RBP8.4□□□□□ -1.06
HPS4-206ENST00000439453 GAS2L1Q99501 681 aaPredicted RBP8.4□□□□□ -1.06
HPS4-206ENST00000439453 SEMA4BQ9NPR2 832 aaPredicted RBP8.4□□□□□ -1.06
HPS4-206ENST00000439453 PIRO00625 290 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 BCKDKO14874 412 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 HOXC11O43248 304 aaPredicted RBP8.4□□□□□ -1.07
HPS4-206ENST00000439453 SNX2O60749 519 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 SOD2P04179 222 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 HLA-DQB2P05538 268 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 CTSAP10619 480 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 CXCR2P25025 360 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 TGFBR1P36897 503 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 ZNF135P52742 658 aaPredicted RBP8.4□□□□□ -1.07
HPS4-206ENST00000439453 MAP3K7CLP57077 242 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 DLX2Q07687 328 aaPredicted RBP8.4□□□□□ -1.07
HPS4-206ENST00000439453 IL18R1Q13478 541 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 RTP2Q5QGT7 225 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 VARS2Q5ST30 1063 aaKnown RBP8.4□□□□□ -1.07
HPS4-206ENST00000439453 SPOUT1Q5T280 376 aaKnown RBP8.4□□□□□ -1.07
HPS4-206ENST00000439453 TUBA3EQ6PEY2 450 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 SCIMPQ6UWF3 145 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 RSPO2Q6UXX9 243 aaPredicted RBP8.4□□□□□ -1.07
HPS4-206ENST00000439453 PRR23BQ6ZRT6 265 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 CLEC20AQ6ZU45 233 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 PAQR9Q6ZVX9 377 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 GALNT7Q86SF2 657 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 OSTM1Q86WC4 334 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 DPP10Q8N608 796 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 OR6P1Q8NGX9 317 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 CHAC2Q8WUX2 184 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 FIG4Q92562 907 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 RPL3LQ92901 407 aaKnown RBP8.4□□□□□ -1.07
HPS4-206ENST00000439453 SLC47A1Q96FL8 570 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 TSPAN18Q96SJ8 248 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 TMEM209Q96SK2 561 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 IL37Q9NZH6 218 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 ZIM2Q9NZV7 527 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 UTS2RQ9UKP6 389 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 CRYL1Q9Y2S2 319 aa8.4□□□□□ -1.07
HPS4-206ENST00000439453 H0Y626 953 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 TAF4O00268 1085 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 CCL22O00626 93 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 SLC16A6O15403 523 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 CCNKO75909 580 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PRKD3O94806 890 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 TRIM16O95361 564 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PTTG1O95997 202 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 BMP1P13497 986 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 POLR2EP19388 210 aaKnown RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 MAGP20916 626 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 MASP1P48740 699 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 DAOAP59103 153 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 RAPSNQ13702 412 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PM20D1Q6GTS8 502 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 FUT10Q6P4F1 479 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 B3GNT8Q7Z7M8 397 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 ZFAND4Q86XD8 727 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 FAM83FQ8NEG4 500 aaPredicted RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 OR7G1Q8NGA0 311 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 ATL1Q8WXF7 558 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 ZHX1-C8orf76Q96EF9 292 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 MED10Q9BTT4 135 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 OR2B2Q9GZK3 357 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 RNF38Q9H0F5 515 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 NSUN3Q9H649 340 aaKnown RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 MARCH7Q9H992 704 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 RBM22Q9NW64 420 aaKnown RBP eCLIP8.39□□□□□ -1.07
HPS4-206ENST00000439453 MARCH4Q9P2E8 410 aaPredicted RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 TBC1D14Q9P2M4 693 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 LIMD1Q9UGP4 676 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 TMA7Q9Y2S6 64 aaKnown RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 TPRKBQ9Y3C4 175 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PCDHGA3Q9Y5H0 932 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 SPO11Q9Y5K1 396 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 GSTA4O15217 222 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms