RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 KIAA1143Q96AT1 154 aaPredicted RBP14.73□□□□□ -0.05
LIMS3-201ENST00000437679 PPM1MQ96MI6 270 aa14.73□□□□□ -0.05
LIMS3-201ENST00000437679 BIRC8Q96P09 236 aa14.73□□□□□ -0.05
LIMS3-201ENST00000437679 FCRL4Q96PJ5 515 aa14.73□□□□□ -0.05
LIMS3-201ENST00000437679 NRTNQ99748 197 aa14.73□□□□□ -0.05
LIMS3-201ENST00000437679 FANCEQ9HB96 536 aa14.73□□□□□ -0.05
LIMS3-201ENST00000437679 FGF21Q9NSA1 209 aa14.73□□□□□ -0.05
LIMS3-201ENST00000437679 C20orf96Q9NUD7 363 aaPredicted RBP14.73□□□□□ -0.05
LIMS3-201ENST00000437679 OR6C2Q9NZP2 312 aa14.73□□□□□ -0.05
LIMS3-201ENST00000437679 BTRCQ9Y297 605 aa14.73□□□□□ -0.05
LIMS3-201ENST00000437679 MRFAP1Q9Y605 127 aa14.73□□□□□ -0.05
LIMS3-201ENST00000437679 EIF4E1BA6NMX2 242 aaKnown RBP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 E5RI56 91 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 ERVH48-1M5A8F1 160 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 SMAPO00193 183 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 NIPSNAP2O75323 286 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 KIAA0754O94854 1291 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 PKMP14618 531 aaKnown RBP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 LIFP15018 202 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 ZNF28P17035 718 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 PGAM1P18669 254 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 CASQ1P31415 396 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 TUBB4BP68371 445 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 DHX9Q08211 1270 aaKnown RBP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 ABHD18Q0P651 414 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 TUBB2AQ13885 445 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 MORF4L2Q15014 288 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 SOWAHCQ53LP3 525 aaPredicted RBP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 TAF1BQ53T94 588 aaPredicted RBP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 C6orf15Q6UXA7 325 aaPredicted RBP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 CENPUQ71F23 418 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 TIPARPQ7Z3E1 657 aaKnown RBP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 DCUN1D3Q8IWE4 304 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 AGGF1Q8N302 714 aaeCLIP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 OR8K5Q8NH50 307 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 GABPB2Q8TAK5 448 aaPredicted RBP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 FOPNLQ96NB1 174 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 NAT9Q9BTE0 207 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 EFHD1Q9BUP0 239 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 TUBB2BQ9BVA1 445 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 CCDC68Q9H2F9 335 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 GPN2Q9H9Y4 310 aaPredicted RBP14.72□□□□□ -0.05
LIMS3-201ENST00000437679 SYTL2Q9HCH5 934 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 LNPEPQ9UIQ6 1025 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 PLAGL1Q9UM63 463 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 PCDHGA4Q9Y5G9 962 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 FAM169AQ9Y6X4 670 aa14.72□□□□□ -0.05
LIMS3-201ENST00000437679 ATXN7O15265 892 aaPredicted RBP14.71□□□□□ -0.05
LIMS3-201ENST00000437679 FANCGO15287 622 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 TTI1O43156 1089 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 TTC4O95801 387 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 S1PR4O95977 384 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 MT-ND3P03897 115 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 CHRM5P08912 532 aaPredicted RBP14.71□□□□□ -0.05
LIMS3-201ENST00000437679 IVDP26440 423 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 RAB28P51157 221 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 ETF1P62495 437 aaKnown RBP14.71□□□□□ -0.05
LIMS3-201ENST00000437679 CTBP1Q13363 440 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 KYNUQ16719 465 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 BBS9Q3SYG4 887 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 KIAA1614Q5VZ46 1190 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 SPESP1Q6UW49 350 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 DENND6AQ8IWF6 608 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 PDIK1LQ8N165 341 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 C17orf53Q8N3J3 647 aaPredicted RBP14.71□□□□□ -0.05
LIMS3-201ENST00000437679 GALNT6Q8NCL4 622 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 FAM136AQ96C01 138 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 RNF31Q96EP0 1072 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 KRT12Q99456 494 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 EBNA1BP2Q99848 306 aaKnown RBP14.71□□□□□ -0.05
LIMS3-201ENST00000437679 FAM167BQ9BTA0 163 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 PITPNM3Q9BZ71 974 aa14.71□□□□□ -0.05
LIMS3-201ENST00000437679 FBXO6Q9NRD1 293 aaPredicted RBP14.71□□□□□ -0.05
LIMS3-201ENST00000437679 LOC101059948A0A1B0GTJ6 334 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 ISM1B1AKI9 464 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 CCNYL3P0C7X3 344 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 TPBGLP0DKB5 382 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 SPTBP11277 2137 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 ST6GAL1P15907 406 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 UGT2B7P16662 529 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 WT1P19544 449 aaPredicted RBP14.7□□□□□ -0.06
LIMS3-201ENST00000437679 ATP5DP30049 168 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 PKLRP30613 574 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 STAT5AP42229 794 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 SLC1A2P43004 574 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 CRYMQ14894 314 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 GPR19Q15760 415 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 HSP90AA5PQ58FG0 334 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 ZNF789Q5FWF6 425 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 SPANXN3Q5MJ09 141 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 PWWP2BQ6NUJ5 590 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 KCNMB4Q86W47 210 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 RAB42Q8N4Z0 105 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 ZBTB2Q8N680 514 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 LSM14AQ8ND56 463 aaKnown RBP14.7□□□□□ -0.06
LIMS3-201ENST00000437679 MAGEC3Q8TD91 643 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 RAD51AP1Q96B01 352 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 ZNF501Q96CX3 271 aaPredicted RBP14.7□□□□□ -0.06
LIMS3-201ENST00000437679 SNF8Q96H20 258 aa14.7□□□□□ -0.06
LIMS3-201ENST00000437679 BBC3Q96PG8 261 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms