RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 TK2O00142 265 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 UBOX5O94941 541 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 EIF2DP41214 584 aaKnown RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 STXBP1P61764 594 aaKnown RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 DPPA4Q7L190 304 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 EXOC3L1Q86VI1 746 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 DSELQ8IZU8 1212 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 TMEM79Q9BSE2 394 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 KLHL25Q9H0H3 589 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 PREBQ9HCU5 417 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 FAM53CQ9NYF3 392 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 ZNF490Q9ULM2 529 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 ZNF780BQ9Y6R6 833 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 HS6ST1O60243 411 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 KLKB1P03952 638 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 LINC00032P0C843 101 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 SGSHP51688 502 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 HNRNPKP61978 463 aaKnown RBP eCLIP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 TBCELQ5QJ74 424 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 ZNF648Q5T619 568 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 TMEM26Q6ZUK4 368 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 RNFT2Q96EX2 444 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 HOXC11O43248 304 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 CHIT1Q13231 466 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 TRNP1Q6NT89 227 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 POU5F2Q8N7G0 328 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 THAP10Q9P2Z0 257 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 WASH3PC4AMC7 463 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 PSMD11O00231 422 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 OR6A2O95222 327 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 TCEA1P23193 301 aaKnown RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 HNMTP50135 292 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 PRRT3Q5FWE3 981 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 ZNF621Q6ZSS3 439 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 PACS2Q86VP3 889 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 ARHGAP12Q8IWW6 846 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 CLDN19Q8N6F1 224 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 SP7Q8TDD2 431 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-207ENST00000429896 TMEM237Q96Q45 408 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 SERHL2Q9H4I8 314 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 SERHLQ9NQF3 203 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 SLC17A6Q9P2U8 582 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 FETUBQ9UGM5 382 aa12.66□□□□□ -0.38
PTCH1-207ENST00000429896 OR5K4A6NMS3 321 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 BPGMP07738 259 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 EPS8Q12929 822 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 NEDD8Q15843 81 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 RSBN1Q5VWQ0 802 aaPredicted RBP12.65□□□□□ -0.38
PTCH1-207ENST00000429896 PIWIL2Q8TC59 973 aaKnown RBP12.65□□□□□ -0.38
PTCH1-207ENST00000429896 TSACCQ96A04 125 aaPredicted RBP12.65□□□□□ -0.38
PTCH1-207ENST00000429896 TRIM39Q9HCM9 518 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 ZDHHC18Q9NUE0 388 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 SLC17A7Q9P2U7 560 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 TAGLN3Q9UI15 199 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 SPINT3P49223 89 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 RAB14P61106 215 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 ARF5P84085 180 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 TDRPQ86YL5 185 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 UNC5BQ8IZJ1 945 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 CHFRQ96EP1 664 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 MTMR10Q9NXD2 777 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 COPG2Q9UBF2 871 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 PSME4Q14997 1843 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 FAM159BA6NKW6 160 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 PTGES3LE9PB15 166 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 ZDHHC11BP0C7U3 371 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 CSTF2P33240 577 aaKnown RBP eCLIP12.65□□□□□ -0.38
PTCH1-207ENST00000429896 SP140Q13342 867 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 ATP1A4Q13733 1029 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 TRIM40Q6P9F5 258 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 PARS2Q7L3T8 475 aaKnown RBP12.65□□□□□ -0.38
PTCH1-207ENST00000429896 DEFB107AQ8IZN7 70 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 OR4E2Q8NGC2 313 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 KCNK4Q9NYG8 393 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 A0A1W2PPC1 479 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 KLHL33A6NCF5 533 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 ATP6V1G2O95670 118 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 CLCQ05315 142 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 TSPAN33Q86UF1 283 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 RASGRP3Q8IV61 690 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 CACTIN-AS1Q8N1I8 211 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 UBASH3BQ8TF42 649 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 NCSTNQ92542 709 aa12.65□□□□□ -0.38
PTCH1-207ENST00000429896 PDE5AO76074 875 aa12.65□□□□□ -0.39
PTCH1-207ENST00000429896 VHLP40337 213 aa12.65□□□□□ -0.39
PTCH1-207ENST00000429896 BST1Q10588 318 aa12.65□□□□□ -0.39
PTCH1-207ENST00000429896 C1orf61Q13536 156 aa12.65□□□□□ -0.39
PTCH1-207ENST00000429896 PLEKHS1Q5SXH7 462 aa12.65□□□□□ -0.39
PTCH1-207ENST00000429896 CCNYL2Q5T2Q4 361 aa12.65□□□□□ -0.39
PTCH1-207ENST00000429896 ATOH1Q92858 354 aaPredicted RBP12.65□□□□□ -0.39
PTCH1-207ENST00000429896 LOXHD1Q8IVV2 1947 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 HMGCLP35914 325 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 C2CD4AQ8NCU7 369 aaPredicted RBP12.64□□□□□ -0.39
PTCH1-207ENST00000429896 STRADBQ9C0K7 418 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 EIF2B4Q9UI10 523 aaKnown RBP12.64□□□□□ -0.39
PTCH1-207ENST00000429896 SBF1O95248 1867 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 ERAL1O75616 437 aaKnown RBP12.64□□□□□ -0.39
PTCH1-207ENST00000429896 GNAZP19086 355 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 CCR8P51685 355 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 CKAP2Q8WWK9 683 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms