RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 SLC38A3Q99624 504 aa16.53■□□□□ 0.24
COL7A1-202ENST00000422991 CCDC3Q9BQI4 270 aa16.53■□□□□ 0.24
COL7A1-202ENST00000422991 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.53■□□□□ 0.24
COL7A1-202ENST00000422991 TOR4AQ9NXH8 423 aa16.53■□□□□ 0.24
COL7A1-202ENST00000422991 POLG2Q9UHN1 485 aa16.53■□□□□ 0.24
COL7A1-202ENST00000422991 TLK1Q9UKI8 766 aa16.53■□□□□ 0.24
COL7A1-202ENST00000422991 ADAMTS6Q9UKP5 1117 aa16.53■□□□□ 0.24
COL7A1-202ENST00000422991 IKZF3Q9UKT9 509 aa16.53■□□□□ 0.24
COL7A1-202ENST00000422991 ACOT9Q9Y305 439 aa16.53■□□□□ 0.24
COL7A1-202ENST00000422991 COL27A1Q8IZC6 1860 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-202ENST00000422991 TLDC2A0PJX2 215 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 NPEPPSL1A6NEC2 478 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 SLC16A5O15375 505 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 KCNK5O95279 499 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 MPOP05164 745 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 ADRB1P08588 477 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 CEACAM1P13688 526 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 KCNA4P22459 653 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 EPHA4P54764 986 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 DLG1Q12959 904 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 CSHL1Q14406 222 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 GRB7Q14451 532 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 CASP8Q14790 479 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 UBE2R2Q712K3 238 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-202ENST00000422991 OR52E1Q8NGJ3 308 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 JPH3Q8WXH2 748 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-202ENST00000422991 DLG3Q92796 817 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 TBC1D10AQ9BXI6 508 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 IGSF5Q9NSI5 407 aa16.52■□□□□ 0.24
COL7A1-202ENST00000422991 TDRKHQ9Y2W6 561 aaKnown RBP16.52■□□□□ 0.24
COL7A1-202ENST00000422991 IGHV1OR21-1A0A087WYE8 117 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 KRT87PA6NCN2 255 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 MYO1CO00159 1063 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 CDC7O00311 574 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 BTN3A1O00481 513 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 LTA4HP09960 611 aaKnown RBP16.51■□□□□ 0.23
COL7A1-202ENST00000422991 TPBGLP0DKB5 382 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 CD1DP15813 335 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 NOVA1P51513 510 aaKnown RBP16.51■□□□□ 0.23
COL7A1-202ENST00000422991 OR1D5P58170 312 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 ATP6V0D1P61421 351 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 ILKQ13418 452 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 PLCL1Q15111 1095 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 PPP1R3AQ16821 1122 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 KRT71Q3SY84 523 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 CCSMST1Q4G0I0 132 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 TTC23LQ6PF05 361 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 SBSNQ6UWP8 590 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 CLEC14AQ86T13 490 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 SPATA6LQ8N4H0 392 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 Q8N9G6 341 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-202ENST00000422991 MAGEC3Q8TD91 643 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 KCTD4Q8WVF5 259 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 RAD51AP1Q96B01 352 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 CABS1Q96KC9 395 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 MENTQ9BUN1 341 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 SLC12A9Q9BXP2 914 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 UNKQ9C0B0 810 aaKnown RBP16.51■□□□□ 0.23
COL7A1-202ENST00000422991 VPS11Q9H270 941 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 TFB2MQ9H5Q4 396 aaKnown RBP16.51■□□□□ 0.23
COL7A1-202ENST00000422991 KCNK4Q9NYG8 393 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 CIDEBQ9UHD4 219 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 PLAGL1Q9UM63 463 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 ICKQ9UPZ9 632 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 PCDHGA1Q9Y5H4 931 aa16.51■□□□□ 0.23
COL7A1-202ENST00000422991 SPAARA0A1B0GVQ0 90 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 FOXO6A8MYZ6 492 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 GIPC1O14908 333 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 B4GAT1O43505 415 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 ZBTB14O43829 449 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 KDM1AO60341 852 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 RFPL3O75679 317 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 DKK1O94907 266 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 KLHL2O95198 593 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 MT-ND3P03897 115 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 KRT15P19012 456 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 CYP2A7P20853 494 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 MAP4P27816 1152 aaKnown RBP16.5■□□□□ 0.23
COL7A1-202ENST00000422991 ALDH4A1P30038 563 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 TSNQ15631 228 aaKnown RBP16.5■□□□□ 0.23
COL7A1-202ENST00000422991 PHKG1Q16816 387 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 FAM83EQ2M2I3 478 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 CEP85LQ5SZL2 805 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 ADAMTSL2Q86TH1 951 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 ACMSDQ8TDX5 336 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 LCN9Q8WX39 176 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 PTERQ96BW5 349 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 NXNL1Q96CM4 212 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 NRTNQ99748 197 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 EPB41L1Q9H4G0 881 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 PARVBQ9HBI1 364 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 NMRAL1Q9HBL8 299 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 PCMTD2Q9NV79 361 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 OGFRQ9NZT2 677 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 NOVA2Q9UNW9 492 aaKnown RBP16.5■□□□□ 0.23
COL7A1-202ENST00000422991 PDE10AQ9Y233 779 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 ANKRD12Q6UB98 2062 aa16.5■□□□□ 0.23
COL7A1-202ENST00000422991 A0A1W2PPM1 405 aa16.49■□□□□ 0.23
COL7A1-202ENST00000422991 FAM221BA6H8Z2 402 aa16.49■□□□□ 0.23
COL7A1-202ENST00000422991 CASC3O15234 703 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms