RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 IQCF5A8MTL0 148 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 MATN2O00339 956 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 CNOT3O75175 753 aaKnown RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 IPO7O95373 1038 aaKnown RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 AP2A1O95782 977 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 CHRM5P08912 532 aaPredicted RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 ETS1P14921 441 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 ACADLP28330 430 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 PEBP1P30086 187 aaKnown RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 CD151P48509 253 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 RPA4Q13156 261 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 KLF1Q13351 362 aaPredicted RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 MRPL49Q13405 166 aaKnown RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 KYNUQ16719 465 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 ZNF385CQ66K41 422 aaPredicted RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 HOOK3Q86VS8 718 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 VRK3Q8IV63 474 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 ZNF655Q8N720 491 aaPredicted RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 Q8NA96 180 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 FLVCR1-AS1Q8TAF5 88 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 SLC35B2Q8TB61 432 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 LKAAEAR1Q8TD35 194 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 HDAC10Q969S8 669 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 ZNF778Q96MU6 729 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 ALS2CR12Q96Q35 445 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 FEZ2Q9UHY8 353 aaPredicted RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 MAP4K5Q9Y4K4 846 aa11.18□□□□□ -0.62
USP4-204ENST00000416417 PCDHGA9Q9Y5G4 932 aaKnown RBP11.18□□□□□ -0.62
USP4-204ENST00000416417 SPTBP11277 2137 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 SLC5A10A0PJK1 596 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 ISM1B1AKI9 464 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 H3BMH7 237 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 KRT86O43790 486 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 SEMA7AO75326 666 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 KLF7O75840 302 aaPredicted RBP11.17□□□□□ -0.62
USP4-204ENST00000416417 CEACAM4O75871 244 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 OR2B3O76000 313 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 SORBS2O94875 1100 aaKnown RBP11.17□□□□□ -0.62
USP4-204ENST00000416417 AP2A2O94973 939 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 AGFG2O95081 481 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 GOT2P00505 430 aaKnown RBP11.17□□□□□ -0.62
USP4-204ENST00000416417 GABRA4P48169 554 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 SEMA3AQ14563 771 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 INPP5JQ15735 1006 aaPredicted RBP11.17□□□□□ -0.62
USP4-204ENST00000416417 SYTL3Q4VX76 610 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 JMJD6Q6NYC1 403 aaPredicted RBP11.17□□□□□ -0.62
USP4-204ENST00000416417 LDB1Q86U70 411 aaPredicted RBP11.17□□□□□ -0.62
USP4-204ENST00000416417 TAX1BP1Q86VP1 789 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 TMEM139Q8IV31 216 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 GPR135Q8IZ08 494 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 RBMXL3Q8N7X1 1067 aaKnown RBP11.17□□□□□ -0.62
USP4-204ENST00000416417 DNAAF3Q8N9W5 541 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 OR13J1Q8NGT2 312 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 CFAP61Q8NHU2 1237 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 LRRC45Q96CN5 670 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 C19orf60Q96EN9 201 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 IL17FQ96PD4 163 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 PPP1R2P1Q96PQ5 205 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 ETNK1Q9HBU6 452 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 LRRC4CQ9HCJ2 640 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 IRAK4Q9NWZ3 460 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 PTRH2Q9Y3E5 179 aaKnown RBP11.17□□□□□ -0.62
USP4-204ENST00000416417 ZNF451Q9Y4E5 1061 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 NAV2Q8IVL1 2488 aa11.17□□□□□ -0.62
USP4-204ENST00000416417 MED13Q9UHV7 2174 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 KRT87PA6NCN2 255 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 C9J4A7 227 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 LIN7AO14910 233 aaPredicted RBP11.16□□□□□ -0.62
USP4-204ENST00000416417 MAP3K7O43318 606 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 ALOX12BO75342 701 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 FTH1P02794 183 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 AGXTP21549 392 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 SHMT2P34897 504 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 NSG1P42857 185 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 SNX1Q13596 522 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 EIF2S3LQ2VIR3 472 aaKnown RBP11.16□□□□□ -0.62
USP4-204ENST00000416417 PAPD7Q5XG87 772 aaKnown RBP11.16□□□□□ -0.62
USP4-204ENST00000416417 SLC6A19Q695T7 634 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 PPP1R21Q6ZMI0 780 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 KRT222Q8N1A0 295 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 UBL4BQ8N7F7 174 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 GLIS1Q8NBF1 620 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 TTC13Q8NBP0 860 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 GALNT11Q8NCW6 608 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 C1orf54Q8WWF1 131 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 MRFAP1L1Q96HT8 127 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 BAG1Q99933 345 aaPredicted RBP11.16□□□□□ -0.62
USP4-204ENST00000416417 SYTL2Q9HCH5 934 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 CAPN6Q9Y6Q1 641 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 LRRK2Q5S007 2527 aa11.16□□□□□ -0.62
USP4-204ENST00000416417 A0A0J9YY10 115 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 A1L4Q6 167 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 TCP11X1B4DZS4 312 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 IFNB1P01574 187 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 MSL3P1P0C860 447 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 ZSCAN5DPP0CG00 497 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 CCR7P32248 378 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 HSPA14Q0VDF9 509 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 ITIH4Q14624 930 aa11.15□□□□□ -0.62
USP4-204ENST00000416417 P3H1Q32P28 736 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms