RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 NFYCQ13952 458 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 SEMA3AQ14563 771 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 PTPRCAPQ14761 206 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 ELOCQ15369 112 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 PGS1Q32NB8 556 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 TMPRSS11BQ86T26 416 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 SMPDL3AQ92484 453 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 CCDC74AQ96AQ1 378 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 OTUB1Q96FW1 271 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-211ENST00000413186 ING2Q9H160 280 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 PCDHGA11Q9Y5H2 935 aa8.36□□□□□ -1.07
SYNE1-211ENST00000413186 TRBV23OR9-2A0A075B6M9 112 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 KLF11O14901 512 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 SNPHO15079 494 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 CDH3P22223 829 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 PTPN6P29350 595 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 PRKG2Q13237 762 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 NDUFA9Q16795 377 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 C5orf22Q49AR2 442 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 DCUN1D3Q8IWE4 304 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 OR2A12Q8NGT7 310 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 MAFAQ8NHW3 353 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 ZFP28Q8NHY6 868 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 RP9Q8TA86 221 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 FAM174AQ8TBP5 190 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 ZNF707Q96C28 371 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 CATSPER2Q96P56 530 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 BBS4Q96RK4 519 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 TRIB3Q96RU7 358 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 NUSAP1Q9BXS6 441 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 BLOC1S6Q9UL45 172 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 PRPF19Q9UMS4 504 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 COQ6Q9Y2Z9 468 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 NDUFAF1Q9Y375 327 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 FAM25AB3EWG3 89 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 FAM25CB3EWG5 89 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 FAM25GB3EWG6 89 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 UBXN8O00124 270 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 TK2O00142 265 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 IL12RB1P42701 662 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 RABIFP47224 123 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 SGSHP51688 502 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 GTF2H2Q13888 395 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 GRIN2CQ14957 1233 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 GTF2H2CQ6P1K8 395 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 AAGABQ6PD74 315 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 PARS2Q7L3T8 475 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 R3HCC1LQ7Z5L2 792 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 IFNEQ86WN2 208 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 OR9Q1Q8NGQ5 310 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 KIAA1191Q96A73 305 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 FCRL3Q96P31 734 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 CCDC28BQ9BUN5 200 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 EFCAB11Q9BUY7 163 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 GATA5Q9BWX5 397 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 MTG2Q9H4K7 406 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 RUBCNLQ9H714 662 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 DMTF1Q9Y222 760 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 ARID2Q68CP9 1835 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 PGM3O95394 542 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 S1PR4O95977 384 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 EIF2S1P05198 315 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 TIMP2P16035 220 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 HOXB6P17509 224 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 PRDX6P30041 224 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 SLC18A2Q05940 514 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 SAMD4BQ5PRF9 694 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 RBM20Q5T481 1227 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 WLSQ5T9L3 541 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 THOC7Q6I9Y2 204 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 MED27Q6P2C8 311 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 LAYNQ6UX15 382 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 GPR150Q8NGU9 434 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 CNBD2Q96M20 576 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 MECRQ9BV79 373 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 LRCH1Q9Y2L9 728 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 SNX5Q9Y5X3 404 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 ACTL7AQ9Y615 435 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 MYO18AQ92614 2054 aaKnown RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 NPIPB15A6NHN6 443 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 GPR89AB7ZAQ6 455 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 BHMG1C9JSJ3 638 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 H0Y858 1186 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 SLC16A5O15375 505 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 GSNP06396 782 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 GPR89BP0CG08 455 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 MPC1LP0DKB6 136 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 UROSP10746 265 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 ME2P23368 584 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 NTSP30990 170 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 CHI3L1P36222 383 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-211ENST00000413186 HNF4AP41235 474 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 CHIT1Q13231 466 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 SQLEQ14534 574 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 ZNF460Q14592 562 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 ATP13A5Q4VNC0 1218 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 FAM182AQ5T1J6 154 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 ZNF765Q7L2R6 523 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 LRRC70Q7Z2Q7 622 aa8.35□□□□□ -1.07
SYNE1-211ENST00000413186 SLC9B2Q86UD5 537 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms