RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 KLHDC8AQ8IYD2 350 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 KIRREL3Q8IZU9 778 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 AFAP1L2Q8N4X5 818 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 OR52B6Q8NGF0 335 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 FAM174AQ8TBP5 190 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 MAPK15Q8TD08 544 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 TRPC4APQ8TEL6 797 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 STON2Q8WXE9 905 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 CCDC138Q96M89 665 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 ZNF382Q96SR6 550 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 PKP4Q99569 1192 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 EBF4Q9BQW3 602 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 PLCD4Q9BRC7 762 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 HGH1Q9BTY7 390 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 TMEM121BQ9BXQ6 578 aaPredicted RBP6.48□□□□□ -1.37
VPS41-204ENST00000413141 CD244Q9BZW8 370 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 WWP1Q9H0M0 922 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 OSGEPL1Q9H4B0 414 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 STN1Q9H668 368 aaKnown RBP6.48□□□□□ -1.37
VPS41-204ENST00000413141 MID1IP1Q9NPA3 183 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 SPATA6Q9NWH7 488 aaPredicted RBP6.48□□□□□ -1.37
VPS41-204ENST00000413141 DNAJC28Q9NX36 388 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 STOX2Q9P2F5 926 aaPredicted RBP6.48□□□□□ -1.37
VPS41-204ENST00000413141 OPTCQ9UBM4 332 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 ACSL5Q9ULC5 683 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 PSMD13Q9UNM6 376 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 INVSQ9Y283 1065 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 STK38LQ9Y2H1 464 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 PLEKHM1Q9Y4G2 1056 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 GPSM3Q9Y4H4 160 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 ST14Q9Y5Y6 855 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 VCANP13611 3396 aa6.48□□□□□ -1.37
VPS41-204ENST00000413141 ZFC3H1O60293 1989 aaKnown RBP6.48□□□□□ -1.37
VPS41-204ENST00000413141 CCDC163A0A0D9SF12 145 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 SPTY2D1-AS1A0A0U1RR47 76 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 A0A1W2PR77 199 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 K7EPI3 171 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 IFRD1O00458 451 aaPredicted RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 EBAG9O00559 213 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 OR7A17O14581 309 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 SNPHO15079 494 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 SCAMP1O15126 338 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 HDAC3O15379 428 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 SKAP2O75563 359 aaPredicted RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 DCTN3O75935 186 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 WDR47O94967 919 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 ESRRBO95718 433 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 SLC16A8O95907 504 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 OTCP00480 354 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 RPN2P04844 631 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 IDSP22304 550 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 RPL10P27635 214 aaKnown RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 IMPA1P29218 277 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 PRDX3P30048 256 aaKnown RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 GDF5P43026 501 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 PIK3CGP48736 1102 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 IDH3AP50213 366 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 CLCNKAP51800 687 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 FOXA1P55317 472 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 PKNOX1P55347 436 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 TBPL1P62380 186 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 CTBSQ01459 385 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 EIF2B5Q13144 721 aaKnown RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 TUBB3Q13509 450 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 PTK2BQ14289 1009 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 FZD2Q14332 565 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 GRB7Q14451 532 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 PDCD2Q16342 344 aaPredicted RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 PTCHD3Q3KNS1 767 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 SLC9B1Q4ZJI4 515 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 VWA5B1Q5TIE3 1220 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 FAM219BQ5XKK7 198 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 CLEC6AQ6EIG7 209 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 CAPRIN2Q6IMN6 1127 aaKnown RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 DUS1LQ6P1R4 473 aaKnown RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 TTC23LQ6PF05 361 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 AGTRAPQ6RW13 159 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 TSSK4Q6SA08 328 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 EPGNQ6UW88 154 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 C6orf89Q6UWU4 347 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 GPRIN3Q6ZVF9 776 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 ZNF771Q7L3S4 317 aaPredicted RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 SYVN1Q86TM6 617 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 ALYREFQ86V81 257 aaKnown RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 WDR5BQ86VZ2 330 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 PARGQ86W56 976 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 SPATS2Q86XZ4 545 aaKnown RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 DEFB119Q8N690 84 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 TEX9Q8N6V9 391 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 OR5AR1Q8NGP9 310 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 OR56A3Q8NH54 315 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 OR5K2Q8NHB8 316 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 MAGEC3Q8TD91 643 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 ATL1Q8WXF7 558 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 TSACCQ96A04 125 aaPredicted RBP6.47□□□□□ -1.37
VPS41-204ENST00000413141 SKA1Q96BD8 255 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 FAR2Q96K12 515 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 HSPA12BQ96MM6 686 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 KCNA7Q96RP8 456 aa6.47□□□□□ -1.37
VPS41-204ENST00000413141 NUSAP1Q9BXS6 441 aaKnown RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms