RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RMI1Q9H9A7 625 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 LYARQ9NX58 379 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 EMC3Q9P0I2 261 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 DEC1Q9P2X7 70 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 FBXW11Q9UKB1 542 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 CLEC4AQ9UMR7 237 aa6□□□□□ -1.45
SCN1A-203ENST00000409050 REXO2Q9Y3B8 237 aaKnown RBP6□□□□□ -1.45
SCN1A-203ENST00000409050 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 A0A1W2PPM1 405 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 DAPL1A0PJW8 107 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF670-ZNF695F2Z2N8 137 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 IL1BP01584 269 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 EPOP01588 193 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 CSNK2A2P19784 350 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 AGTR1P30556 359 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 PTGS2P35354 604 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SUOXP51687 545 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 RHBDL3P58872 404 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ACTC1P68032 377 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ACTA1P68133 377 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 GAD2Q05329 585 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 FGL1Q08830 312 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 CTBP1Q13363 440 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 TIGD6Q17RP2 521 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ZNF773Q6PK81 442 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SLC24A5Q71RS6 500 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 CHST9Q7L1S5 443 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ENDOVQ8N8Q3 282 aaKnown RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ZBTB45Q96K62 511 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 CCDC115Q96NT0 180 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 BIRC8Q96P09 236 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 LGMNQ99538 433 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SLC6A15Q9H2J7 730 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 C12orf65Q9H3J6 166 aaKnown RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ARHGEF4Q9NR80 690 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 TMEM184CQ9NVA4 438 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 FLRT1Q9NZU1 646 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 FZD10Q9ULW2 581 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 PCDHB9Q9Y5E1 797 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 FKBP7Q9Y680 259 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 CDH10Q9Y6N8 788 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 E7ENX8 843 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 L7N2F9 121 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 E2F3O00716 465 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 LRRTM2O43300 516 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 GRID2O43424 1007 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 GKN3PP0CG01 181 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 TSPAN5P62079 268 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 VAMP2P63027 116 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SLC13A2Q13183 592 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 PTGR1Q14914 329 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 PPP1R26Q5T8A7 1209 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 NBPF12Q5TAG4 269 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ULK3Q6PHR2 472 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 FOXR1Q6PIV2 292 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 AHSA2Q719I0 299 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 POF1BQ8WVV4 589 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 OVCA2Q8WZ82 227 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 TESCQ96BS2 214 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SLC7A6OSQ96CW6 309 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 CMTM7Q96FZ5 175 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 TRNT1Q96Q11 434 aaKnown RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SCP2D1Q9UJQ7 156 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 MAFFQ9ULX9 164 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ABCG2Q9UNQ0 655 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 Q9Y3F1 56 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ASB4Q9Y574 426 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 GRXCR2A6NFK2 248 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 OR2AT4A6NND4 320 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 FAM25EA8MYX2 175 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 WNT10BO00744 389 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 DCLK1O15075 740 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 CDC40O60508 579 aaKnown RBP eCLIP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 AK1P00568 194 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SLC2A2P11168 524 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 HOXD8P13378 290 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ACVR2AP27037 513 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 S100A2P29034 98 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SLC15A1P46059 708 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ATXN1P54253 815 aaKnown RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 RHDQ02161 417 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SLC18A2Q05940 514 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ST3GAL3Q11203 375 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 RABL3Q5HYI8 236 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 EARS2Q5JPH6 523 aaKnown RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 FAM117BQ6P1L5 589 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 LRRN1Q6UXK5 716 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 ERMP1Q7Z2K6 904 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 MTMR14Q8NCE2 650 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 OR10G2Q8NGC3 310 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 OR4K2Q8NGD2 314 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SLC35B2Q8TB61 432 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 DNASE1L2Q92874 299 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 MTFMTQ96DP5 389 aaKnown RBP5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SLC45A3Q96JT2 553 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 TM9SF2Q99805 663 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 NDC1Q9BTX1 674 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 TMPRSS4Q9NRS4 437 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 SMPD4Q9NXE4 827 aa5.99□□□□□ -1.45
SCN1A-203ENST00000409050 TRIM17Q9Y577 477 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms