RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 NVLO15381 856 aaKnown RBP21.07■□□□□ 0.96
CLN3-207ENST00000395653 TLX3O43711 291 aaPredicted RBP21.07■□□□□ 0.96
CLN3-207ENST00000395653 TPBGLP0DKB5 382 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 SSTR1P30872 391 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 PCBP4P57723 403 aaKnown RBP21.07■□□□□ 0.96
CLN3-207ENST00000395653 ACSBG2Q5FVE4 666 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 UGT3A1Q6NUS8 523 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 TTC23LQ6PF05 361 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 NEK10Q6ZWH5 1172 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 CYS1Q717R9 158 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 SLC26A11Q86WA9 606 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 CCDC25Q86WR0 208 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 FAM129CQ86XR2 697 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 SIDT2Q8NBJ9 832 aaKnown RBP21.07■□□□□ 0.96
CLN3-207ENST00000395653 CD200R1Q8TD46 325 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 KLHL6Q8WZ60 621 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 INPP5DQ92835 1189 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 NDNQ99608 321 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 GPR21Q99679 349 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 SLC30A3Q99726 388 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 XKR8Q9H6D3 395 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 NSMCE4AQ9NXX6 385 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 OR6C2Q9NZP2 312 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 POMT2Q9UKY4 750 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 PCDHGA3Q9Y5H0 932 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 NFS1Q9Y697 457 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 ACACAQ13085 2346 aa21.07■□□□□ 0.96
CLN3-207ENST00000395653 EFCAB7A8K855 629 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 EIF3FO00303 357 aaPredicted RBP21.06■□□□□ 0.96
CLN3-207ENST00000395653 BTN3A1O00481 513 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 MATN4O95460 622 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 ENO3P13929 434 aaPredicted RBP21.06■□□□□ 0.96
CLN3-207ENST00000395653 CD9P21926 228 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 CCNFP41002 786 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 SKIV2L2P42285 1042 aaKnown RBP21.06■□□□□ 0.96
CLN3-207ENST00000395653 RAB15P59190 212 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 KYNUQ16719 465 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 KLHL38Q2WGJ6 581 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 TMEM164Q5U3C3 297 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 CAPN12Q6ZSI9 719 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 KMT5CQ86Y97 462 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 ADGRF3Q8IZF5 1079 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 USP7Q93009 1102 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 TAAR9Q96RI9 348 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 NRTNQ99748 197 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 MAP3K3Q99759 626 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 SIDT1Q9NXL6 827 aaKnown RBP21.06■□□□□ 0.96
CLN3-207ENST00000395653 TAS2R13Q9NYV9 303 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 ACSL6Q9UKU0 697 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 RAXQ9Y2V3 346 aa21.06■□□□□ 0.96
CLN3-207ENST00000395653 IGHV5-51A0A0C4DH38 117 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 GSAPA4D1B5 854 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 C2orf74A8MZ97 194 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 C1orf105O95561 183 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 CBSLP0DN79 551 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 SLC5A2P31639 672 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 CBSP35520 551 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 MAGEA4P43358 317 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 SEPHS1P49903 392 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 RAB28P51157 221 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 KPNA2P52292 529 aaKnown RBP21.05■□□□□ 0.96
CLN3-207ENST00000395653 MC2RQ01718 297 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 GRB7Q14451 532 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 RBM20Q5T481 1227 aaKnown RBP21.05■□□□□ 0.96
CLN3-207ENST00000395653 MAGEC3Q8TD91 643 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 CDKL2Q92772 493 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 RAD51AP1Q96B01 352 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 SLC41A2Q96JW4 573 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 MENTQ9BUN1 341 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 DDA1Q9BW61 102 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 TWSG1Q9GZX9 223 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 FBXO8Q9NRD0 319 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 MTRF1LQ9UGC7 380 aaKnown RBP21.05■□□□□ 0.96
CLN3-207ENST00000395653 TRMT6Q9UJA5 497 aaKnown RBP21.05■□□□□ 0.96
CLN3-207ENST00000395653 PLAGL1Q9UM63 463 aa21.05■□□□□ 0.96
CLN3-207ENST00000395653 TCRBV9S1A1TA0A576 114 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 C9orf172C9J069 976 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 MPC1LP0DKB6 136 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 NELFEP18615 380 aaKnown RBP21.04■□□□□ 0.96
CLN3-207ENST00000395653 PKLRP30613 574 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 ABCG1P45844 678 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 TIAL1Q01085 375 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN3-207ENST00000395653 CUL1Q13616 776 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 CEP128Q6ZU80 1094 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 C3orf62Q6ZUJ4 267 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 ZNF248Q8NDW4 579 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 RAB11FIP5Q9BXF6 653 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 ASPSCR1Q9BZE9 553 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 C1GALT1Q9NS00 363 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 SLC39A1Q9NY26 324 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 RUVBL2Q9Y230 463 aaKnown RBP21.04■□□□□ 0.96
CLN3-207ENST00000395653 PSAT1Q9Y617 370 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 PIPSLA2A3N6 862 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 SRRM3A6NNA2 597 aaPredicted RBP21.04■□□□□ 0.96
CLN3-207ENST00000395653 RASGRF2O14827 1237 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 PRAMEF10O60809 474 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 PSIP1O75475 530 aaKnown RBP21.04■□□□□ 0.96
CLN3-207ENST00000395653 SPAG6O75602 509 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 CHRM5P08912 532 aaPredicted RBP21.04■□□□□ 0.96
CLN3-207ENST00000395653 PRDX3P30048 256 aaKnown RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms