RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CPXM1Q96SM3 734 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 ERVK-5Q9HDB9 667 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 NDRG2Q9UN36 371 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 H0YGN5 161 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 MLLT3P42568 568 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 DPY19L1Q2PZI1 675 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 MINDY2Q8NBR6 621 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 RBM15BQ8NDT2 890 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 OR2L8Q8NGY9 312 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 DGAT2Q96PD7 388 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 LYPLA2O95372 231 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 GNAZP19086 355 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 AGXTP21549 392 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 RYKP34925 604 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 APLP1P51693 650 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 ANKRD23Q86SG2 305 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 HID1Q8IV36 788 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 OR8H3Q8N146 312 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 PNO1Q9NRX1 252 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 CDC14AQ9UNH5 594 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 SMIM28A0A1B0GU29 152 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 PPEF2O14830 753 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 SPATA31C1P0DKV0 1188 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 S100A2P29034 98 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 L1CAMP32004 1257 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 EEF1DP3Q658K8 133 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 ANO7Q6IWH7 933 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 FUT10Q6P4F1 479 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 ABHD15Q6UXT9 468 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 NPAS4Q8IUM7 802 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 OR6K6Q8NGW6 343 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 OVCA2Q8WZ82 227 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 TOP1MTQ969P6 601 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 PNPLA2Q96AD5 504 aa12.58□□□□□ -0.4
CCDC88C-204ENST00000389857 SMCO3A2RU48 225 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC7A1P30825 629 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 RFTN1Q14699 578 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 ARL13AQ5H913 290 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 OR5K1Q8NHB7 308 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 PIWIL1Q96J94 861 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 TBATAQ96M53 351 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 GPR20Q99678 358 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 SSU72Q9NP77 194 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 EIF3KQ9UBQ5 218 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 MLXQ9UH92 298 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 BPNT1O95861 308 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 PVALBP20472 110 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CTSOP43234 321 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF782Q6ZMW2 699 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC29A4Q7RTT9 530 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 ANKRD46Q86W74 232 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CBR4Q8N4T8 237 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 ANKHQ9HCJ1 492 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 EIF2B3Q9NR50 452 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 PIM1P11309 404 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CXCR1P25024 350 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 DCKP27707 260 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 HNRNPH3P31942 346 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CSTF1Q05048 431 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 GHDCQ8N2G8 530 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 HDDC3Q8N4P3 179 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 NUS1Q96E22 293 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 NMUR2Q9GZQ4 415 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 METTL8Q9H825 291 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 FCF1Q9Y324 198 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 AGLP35573 1532 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 C2orf71A6NGG8 1288 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 C9J4A7 227 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 RAP2AP10114 183 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 PLGLB1Q02325 96 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 FSTL1Q12841 308 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 IL17AQ16552 155 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CYP2U1Q7Z449 544 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 WFIKKN2Q8TEU8 576 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 TBL1XR1Q9BZK7 514 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 TELO2Q9Y4R8 837 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 DCCP43146 1447 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 IFNA21P01568 189 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 C4BPAP04003 597 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CDKN2BP42772 138 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 YAP1P46937 504 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 DGKGP49619 791 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 IQCCQ4KMZ1 466 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 COLEC12Q5KU26 742 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 SPOCK2Q92563 424 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 HSD17B14Q9BPX1 270 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 IL36AQ9UHA7 158 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 PCDHA2Q9Y5H9 948 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 PIP5K1BO14986 540 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 NR2C1P13056 603 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CLCNKBP51801 687 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 MBOAT1Q6ZNC8 495 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 AMZ2Q86W34 360 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CHERPQ8IWX8 916 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CEP76Q8TAP6 659 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 LRTOMTQ8WZ04 291 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF514Q96K75 400 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 CIDEBQ9UHD4 219 aa12.57□□□□□ -0.4
CCDC88C-204ENST00000389857 FZD10Q9ULW2 581 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms