RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 NT5MQ9NPB1 228 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 WASH6PQ9NQA3 447 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 ARL8BQ9NVJ2 186 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 OR10H1Q9Y4A9 318 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 MAGI1Q96QZ7 1491 aaPredicted RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 A0A087WZ62 844 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 E7ESA3 106 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 COQ9O75208 318 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 GCATO75600 419 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 GH1P01241 217 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 REEP5Q00765 189 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 DUSP4Q13115 394 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 ABRAXAS2Q15018 415 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 NDUFA9Q16795 377 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 CD163Q86VB7 1156 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 MAPK15Q8TD08 544 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 PMM1Q92871 262 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 OR4K3Q96R72 315 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 PCDHB18PQ96TA0 734 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 SYT15Q9BQS2 421 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 ALG9Q9H6U8 611 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 PLLPQ9Y342 182 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 RRAS2P62070 204 aaPredicted RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 SCARB2Q14108 478 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 PXKQ7Z7A4 578 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 GPR149Q86SP6 731 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 UNC5CLQ8IV45 518 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 DCUN1D3Q8IWE4 304 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 PLEKHA3Q9HB20 300 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 ABCA8O94911 1581 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 PTCH1Q13635 1447 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 EI24O14681 340 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 INMTO95050 263 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 UBBP0CG47 229 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 UBCP0CG48 685 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 C7P10643 843 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 CYP2A6P11509 494 aaPredicted RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 CD247P20963 164 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 FXR2P51116 673 aaKnown RBP eCLIP8.6□□□□□ -1.034e-6■■■□□ 16.3
LIG3-202ENST00000378526 RPS27AP62979 156 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 UBA52P62987 128 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 ST3GAL4Q11206 333 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 STXBP5Q5T5C0 1151 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 C3P1Q6ZMU1 363 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 BRINP3Q76B58 766 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 TRMT11Q7Z4G4 463 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 SLC41A1Q8IVJ1 513 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 LRRC57Q8N9N7 239 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 GLB1L3Q8NCI6 653 aaPredicted RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 SIMC1Q8NDZ2 872 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 CAMK1GQ96NX5 476 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 TFB2MQ9H5Q4 396 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 IPPKQ9H8X2 491 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 SPIN1Q9Y657 262 aaPredicted RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 A0A1W2PP64 1363 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 CCDC163A0A0D9SF12 145 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 AQP12BA6NM10 295 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 TGOLN2O43493 480 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 COL6A2P12110 1019 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 PKLRP30613 574 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 GLP1RP43220 463 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 GYG1P46976 350 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 ART1P52961 327 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 BTN1A1Q13410 526 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 TMEM132BQ14DG7 1078 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 AQP12AQ8IXF9 295 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 LRTOMTQ8WZ04 291 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 ZNF597Q96LX8 424 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 ZNF286AQ9HBT8 521 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 SSU72Q9NP77 194 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 C11orf16Q9NQ32 467 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 KCNIP2Q9NS61 270 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 AKAP3O75969 853 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 KCNK2O95069 426 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 HMGN1P05114 100 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 GMPRP36959 345 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 HK3P52790 923 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 SLC30A6Q6NXT4 461 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 MTURNQ8N3F0 131 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 CHAC2Q8WUX2 184 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 DCPSQ96C86 337 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 PPCDCQ96CD2 204 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 COQ8BQ96D53 544 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 PPP1R16AQ96I34 528 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 FAM84AQ96KN4 292 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 PAPOLGQ9BWT3 736 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 ZDHHC9Q9Y397 364 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 WDR45Q9Y484 360 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 LRP5LA4QPB2 252 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 J3QRK9 145 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 TLX3O43711 291 aaPredicted RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 CATP04040 527 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 NR4A2P43354 598 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 CSNK2A1P68400 391 aaPredicted RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 METTL11BQ5VVY1 283 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 ZNF367Q7RTV3 350 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 UBR7Q8N806 425 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 GMCL1P1Q8NEA9 526 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 CSNK2A3Q8NEV1 391 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 CNOT9Q92600 299 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms