RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 NPY2RP49146 381 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 CSRP3P50461 194 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 RPS18P62269 152 aaKnown RBP13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 GRB7Q14451 532 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 UGT8Q16880 541 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 FASTKD1Q53R41 847 aaKnown RBP13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 ZNF385CQ66K41 422 aaPredicted RBP13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 SYVN1Q86TM6 617 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 PTRH1Q86Y79 214 aaKnown RBP13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 PRELID2Q8N945 189 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 PPHLN1Q8NEY8 458 aaKnown RBP13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 OR6P1Q8NGX9 317 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 ADAMTS17Q8TE56 1095 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 MAIP1Q8WWC4 291 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 SEC14L1Q92503 715 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 CPT1BQ92523 772 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 TTC1Q99614 292 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 KIFC1Q9BW19 673 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 FAM60AQ9NP50 221 aa13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 ZNF71Q9NQZ8 489 aaPredicted RBP13.22□□□□□ -0.29
TNFRSF1A-202ENST00000366159 CDC14CA4D256 554 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 IQCF5A8MTL0 148 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 TMEM150CB9EJG8 249 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 K7EM74 188 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 CD3EAPO15446 510 aaKnown RBP13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 SLCO2B1O94956 709 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 UGT2B7P16662 529 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 TPSB2P20231 275 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 ARNTP27540 789 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 PEBP1P30086 187 aaKnown RBP13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 MAGEA6P43360 314 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 PMS2P54278 862 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 PRAMEP78395 509 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 CRADDP78560 199 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 CDK16Q00536 496 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 KCNC4Q03721 635 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 IL10RAQ13651 578 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 TPSAB1Q15661 275 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 KYNUQ16719 465 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 DNAJC21Q5F1R6 531 aaKnown RBP13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 TCTN3Q6NUS6 607 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 LRRC8BQ6P9F7 803 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 LDB1Q86U70 411 aaPredicted RBP13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 TRIM4Q9C037 500 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 IL22Q9GZX6 179 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 KLHL25Q9H0H3 589 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 CHST8Q9H2A9 424 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 CLMPQ9H6B4 373 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 FANCEQ9HB96 536 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 CATSPERZQ9NTU4 200 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 SERTAD3Q9UJW9 196 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 ANAPC2Q9UJX6 822 aa13.21□□□□□ -0.29
TNFRSF1A-202ENST00000366159 COL12A1Q99715 3063 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 TCRBV7S3A2A0A539 114 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 AP3B1O00203 1094 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 PRMT5O14744 637 aaPredicted RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 KLK3P07288 261 aaPredicted RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 RPS3P23396 243 aaKnown RBP eCLIP13.2□□□□□ -0.34e-7■■■□□ 15.4
TNFRSF1A-202ENST00000366159 NMBRP28336 390 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 PKLRP30613 574 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 CXCR5P32302 372 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 PPARGP37231 505 aaPredicted RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 CASRP41180 1078 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 TTPAP49638 278 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 SESN2P58004 480 aaPredicted RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 RPS15P62841 145 aaKnown RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 KIR2DS3Q14952 304 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 KCTD19Q17RG1 926 aaPredicted RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 SLC5A12Q1EHB4 618 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 SYTL3Q4VX76 610 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 AARS2Q5JTZ9 985 aaKnown RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 FAM198BQ6UWH4 519 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 TRIM73Q86UV7 250 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 RASGEF1CQ8N431 466 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 DNAJC22Q8N4W6 341 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 C19orf47Q8N9M1 422 aaKnown RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 LINC01555Q8NAE3 123 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 ASZ1Q8WWH4 475 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 THAP4Q8WY91 577 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 MR1Q95460 341 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 TCTN2Q96GX1 697 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 NLNQ9BYT8 704 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 TRIM55Q9BYV6 548 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 EPN3Q9H201 632 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 ACTR5Q9H9F9 607 aaPredicted RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 MRM3Q9HC36 420 aaKnown RBP13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 MLXIPLQ9NP71 852 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 HOMER3Q9NSC5 361 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 TLK1Q9UKI8 766 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 TP53TG5Q9Y2B4 290 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 PPP2R2CQ9Y2T4 447 aa13.2□□□□□ -0.3
TNFRSF1A-202ENST00000366159 A0A0J9YY10 115 aa13.19□□□□□ -0.3
TNFRSF1A-202ENST00000366159 F8W8V4 182 aa13.19□□□□□ -0.3
TNFRSF1A-202ENST00000366159 ZNF749O43361 778 aa13.19□□□□□ -0.3
TNFRSF1A-202ENST00000366159 CEP104O60308 925 aa13.19□□□□□ -0.3
TNFRSF1A-202ENST00000366159 RFPL1O75677 317 aa13.19□□□□□ -0.3
TNFRSF1A-202ENST00000366159 CTSBP07858 339 aa13.19□□□□□ -0.3
TNFRSF1A-202ENST00000366159 GCGRP47871 477 aa13.19□□□□□ -0.3
TNFRSF1A-202ENST00000366159 RAB28P51157 221 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms